ATTED-II : GeneID search result

[←][→] ath AT3G56860 Gene

functional annotation

Function

UBP1-associated protein 2A

GO BP

GO:0048255 [list] [network] mRNA stabilization	(4 genes)	NAS
GO:0009693 [list] [network] ethylene biosynthetic process	(24 genes)	IMP
GO:0010150 [list] [network] leaf senescence	(111 genes)	IMP
GO:0008219 [list] [network] cell death	(127 genes)	IMP
GO:0009738 [list] [network] abscisic acid-activated signaling pathway	(194 genes)	TAS
GO:0006952 [list] [network] defense response	(1420 genes)	IMP

GO CC

GO:0005829 [list] [network] cytosol	(3506 genes)	IDA
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0035925 [list] [network] mRNA 3'-UTR AU-rich region binding	(2 genes)	IDA
GO:0003729 [list] [network] mRNA binding	(1026 genes)	IDA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath03040 [list] [network] Spliceosome (192 genes)

Protein

NP_001190109.1 NP_001190110.1 NP_001319772.1 NP_001325969.1 NP_001325970.1 NP_001325971.1 NP_001325972.1 NP_001325973.1 NP_567042.1 NP_850710.1 NP_850711.1

BLAST

NP_001190109.1 NP_001190110.1 NP_001319772.1 NP_001325969.1 NP_001325970.1 NP_001325971.1 NP_001325972.1 NP_001325973.1 NP_567042.1 NP_850710.1 NP_850711.1

Orthologous

[Ortholog page] AT2G41060 (ath) LOC4326212 (osa) LOC7453742 (ppo) LOC7479624 (ppo) LOC11435209 (mtr) LOC11436987 (mtr) LOC100243393 (vvi) GO:0003676 (vvi) LOC100283567 (zma) LOC100783742 (gma) LOC100784200 (gma) LOC100792637 (gma) LOC100819802 (gma) LOC101255522 (sly) LOC103841585 (bra) LOC103865862 (bra)

Subcellular
localization
wolf

nucl 9, cyto 1	(predict for NP_001190109.1)
nucl 9, cyto 1	(predict for NP_001190110.1)
nucl 9, cyto 1	(predict for NP_001319772.1)
nucl 9, cyto 1	(predict for NP_001325969.1)
nucl 9, cyto 1	(predict for NP_001325970.1)
nucl 9, cyto 1	(predict for NP_001325971.1)
nucl 9, cyto 1	(predict for NP_001325972.1)
nucl 9, cyto 1	(predict for NP_001325973.1)
nucl 9, cyto 1	(predict for NP_567042.1)
nucl 9, cyto 1	(predict for NP_850710.1)
nucl 9, cyto 1	(predict for NP_850711.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001190109.1)
other 8	(predict for NP_001190110.1)
other 8	(predict for NP_001319772.1)
other 8	(predict for NP_001325969.1)
other 8	(predict for NP_001325970.1)
other 8	(predict for NP_001325971.1)
other 8	(predict for NP_001325972.1)
other 8	(predict for NP_001325973.1)
other 8	(predict for NP_567042.1)
other 8	(predict for NP_850710.1)
other 8	(predict for NP_850711.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	10
ath03015	mRNA surveillance pathway	2

Genes directly connected with UBA2A on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
12.4	ATU2AF65A	U2 snRNP auxilliary factor, large subunit, splicing factor	[detail]	829822
10.8	AT2G41060	RNA-binding (RRM/RBD/RNP motifs) family protein	[detail]	818705
10.2	AT5G15270	RNA-binding KH domain-containing protein	[detail]	831379
8.1	AT3G15010	RNA-binding (RRM/RBD/RNP motifs) family protein	[detail]	820730
8.0	AT4G39680	SAP domain-containing protein	[detail]	830123
6.4	AT5G17510	mediator of RNA polymerase II transcription subunit-like protein	[detail]	831617

Coexpressed
gene list

[Coexpressed gene list for UBA2A]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

246292_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

246292_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

246292_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824853
Refseq ID (protein)	NP_001190109.1
	NP_001190110.1
	NP_001319772.1
	NP_001325969.1
	NP_001325970.1
	NP_001325971.1
	NP_001325972.1
	NP_001325973.1
	NP_567042.1
	NP_850710.1
	NP_850711.1

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