[←][→] ath   AT3G62840 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0008380 [list] [network] RNA splicing  (272 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0030532 [list] [network] small nuclear ribonucleoprotein complex  (76 genes)  IEA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA RCA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001078331.1  NP_567134.3 
BLAST NP_001078331.1  NP_567134.3 
Orthologous [Ortholog page] AT2G47640 (ath)  LOC4338385 (osa)  LOC11425290 (mtr)  LOC11426500 (mtr)  LOC100193106 (zma)  LOC100193568 (zma)  LOC100258827 (vvi)  LOC100280773 (zma)  LOC100500203 (gma)  LOC100792526 (gma)  LOC100793233 (gma)  LOC101246377 (sly)  LOC103830369 (bra)  LOC103842086 (bra)  LOC103862772 (bra) 
Subcellular
localization
wolf
cyto 4,  extr 3,  chlo 2,  nucl 1  (predict for NP_001078331.1)
cyto 4,  chlo 3,  extr 2,  nucl 1,  chlo_mito 1  (predict for NP_567134.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001078331.1)
other 8  (predict for NP_567134.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
ath03020 RNA polymerase 3
ath03040 Spliceosome 2
Genes directly connected with AT3G62840 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.4 NRPB10 RNA polymerases N / 8 kDa subunit [detail] 837690
7.3 PFD6 prefoldin 6 [detail] 839878
6.5 TIM9 Tim10/DDP family zinc finger protein [detail] 823809
Coexpressed
gene list		 [Coexpressed gene list for AT3G62840]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251184_at
251184_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251184_at
251184_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251184_at
251184_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825459      
Refseq ID (protein) NP_001078331.1 
NP_567134.3 


The preparation time of this page was 1.1 [sec].