ATTED-II : GeneID search result

[←][→] ath AT4G16990 Gene

functional annotation

Function

disease resistance protein (TIR-NBS class)

GO BP

GO:2000071 [list] [network] regulation of defense response by callose deposition	(4 genes)	IMP
GO:0009861 [list] [network] jasmonic acid and ethylene-dependent systemic resistance	(17 genes)	IMP
GO:0009817 [list] [network] defense response to fungus, incompatible interaction	(50 genes)	IMP
GO:0007165 [list] [network] signal transduction	(1575 genes)	IEA

GO CC

GO:0005829 [list] [network] cytosol	(3506 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0043531 [list] [network] ADP binding	(127 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2003 genes)	IEA

KEGG

Protein

NP_001031652.1 NP_001319972.1 NP_001319973.1 NP_001329871.1 NP_001329872.1 NP_001329873.1 NP_001329874.1 NP_001329875.1 NP_001329876.1 NP_001329877.1 NP_001329878.1 NP_001329879.1 NP_001329880.1 NP_001329881.1 NP_001329882.1 NP_001329883.1 NP_193432.4 NP_849399.1 NP_849400.2

BLAST

Orthologous

Subcellular
localization
wolf

nucl 5, cyto 1, pero 1, cyto_pero 1	(predict for NP_001031652.1)
nucl 7, cyto 1, vacu 1, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001319972.1)
nucl 5, cyto 1, pero 1, cyto_pero 1	(predict for NP_001319973.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for NP_001329871.1)
nucl 5, cyto 1, pero 1, cyto_pero 1	(predict for NP_001329872.1)
nucl 7, cyto 1, vacu 1, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001329873.1)
nucl 7, cyto 1, vacu 1, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001329874.1)
nucl 8, cyto 1	(predict for NP_001329875.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for NP_001329876.1)
nucl 7, cyto 1, vacu 1, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001329877.1)
nucl 5, cyto 1, pero 1, cyto_pero 1	(predict for NP_001329878.1)
nucl 5, cyto 1, pero 1, cyto_pero 1	(predict for NP_001329879.1)
chlo 2, nucl 2, cyto 2, cyto_nucl 2, mito 1, cysk 1	(predict for NP_001329880.1)
nucl 8, chlo 1, cyto 1, vacu 1	(predict for NP_001329881.1)
nucl 8, cyto 1	(predict for NP_001329882.1)
nucl 7, cyto 1, vacu 1, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001329883.1)
nucl 8, cyto 1	(predict for NP_193432.4)
nucl 7, cyto 1, vacu 1, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_849399.1)
nucl 5, cyto 1, pero 1, cyto_pero 1	(predict for NP_849400.2)

Subcellular
localization
TargetP

other 7, scret 3	(predict for NP_001031652.1)
other 6	(predict for NP_001319972.1)
other 7, scret 3	(predict for NP_001319973.1)
other 7, scret 3	(predict for NP_001329871.1)
other 7, scret 3	(predict for NP_001329872.1)
other 6	(predict for NP_001329873.1)
other 6	(predict for NP_001329874.1)
other 6	(predict for NP_001329875.1)
other 7, scret 3	(predict for NP_001329876.1)
other 6	(predict for NP_001329877.1)
other 7, scret 3	(predict for NP_001329878.1)
other 7, scret 3	(predict for NP_001329879.1)
other 8	(predict for NP_001329880.1)
other 8	(predict for NP_001329881.1)
other 6	(predict for NP_001329882.1)
other 6	(predict for NP_001329883.1)
other 6	(predict for NP_193432.4)
other 6	(predict for NP_849399.1)
other 7, scret 3	(predict for NP_849400.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with RLM3 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.1	AT4G17000	neurofilament heavy protein	[detail]	827408
4.2	ATATH8	Protein kinase superfamily protein	[detail]	818504
3.9	AT1G49730	Protein kinase superfamily protein	[detail]	841396

Coexpressed
gene list

[Coexpressed gene list for RLM3]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

245460_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

245460_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

245460_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	827407
Refseq ID (protein)	NP_001031652.1
	NP_001319972.1
	NP_001319973.1
	NP_001329871.1
	NP_001329872.1
	NP_001329873.1
	NP_001329874.1
	NP_001329875.1
	NP_001329876.1
	NP_001329877.1
	NP_001329878.1
	NP_001329879.1
	NP_001329880.1
	NP_001329881.1
	NP_001329882.1
	NP_001329883.1
	NP_193432.4
	NP_849399.1
	NP_849400.2

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