ATTED-II : GeneID search result

[←][→] ath AT4G03430 Gene

functional annotation

Function

pre-mRNA splicing factor-like protein

GO BP

GO:2000630 [list] [network] positive regulation of miRNA metabolic process	(3 genes)	IBA IMP
GO:2000636 [list] [network] positive regulation of primary miRNA processing	(3 genes)	IBA IMP
GO:0000244 [list] [network] spliceosomal tri-snRNP complex assembly	(5 genes)	IBA
GO:0080188 [list] [network] RNA-directed DNA methylation	(20 genes)	IBA IMP
GO:0009845 [list] [network] seed germination	(93 genes)	IMP
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(172 genes)	IBA ISS
GO:0009409 [list] [network] response to cold	(411 genes)	IMP

GO CC

GO:0015030 [list] [network] Cajal body	(16 genes)	IDA
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex	(27 genes)	IBA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(48 genes)	IBA
GO:0005681 [list] [network] spliceosomal complex	(142 genes)	IDA
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA ISM

GO MF

GO:0005515 [list] [network] protein binding

(4605 genes)

IPI

KEGG

ath03040 [list] [network] Spliceosome (192 genes)

Protein

NP_001319859.1 NP_001329764.1 NP_192252.1

BLAST

NP_001319859.1 NP_001329764.1 NP_192252.1

Orthologous

[Ortholog page] LOC4349020 (osa) LOC25498758 (mtr) LOC100251732 (vvi) LOC100779042 (gma) LOC100783360 (gma) LOC101265451 (sly) LOC103640981 (zma) LOC103650586 (zma) LOC103846633 (bra)

Subcellular
localization
wolf

cyto 6, chlo 2, nucl 1	(predict for NP_001319859.1)
cyto 6, chlo 2, nucl 1	(predict for NP_001329764.1)
cyto 6, chlo 2, nucl 1	(predict for NP_192252.1)

Subcellular
localization
TargetP

other 4, chlo 4	(predict for NP_001319859.1)
other 4, chlo 4	(predict for NP_001329764.1)
other 4, chlo 4	(predict for NP_192252.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

Genes directly connected with EMB2770 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.2	AT5G64270	splicing factor	[detail]	836548
7.9	NFXL1	NF-X-like 1	[detail]	837555
7.7	AT3G22980	Ribosomal protein S5/Elongation factor G/III/V family protein	[detail]	821872

Coexpressed
gene list

[Coexpressed gene list for EMB2770]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

255382_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

255382_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

255382_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	827925
Refseq ID (protein)	NP_001319859.1
	NP_001329764.1
	NP_192252.1

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