[←][→] ath   AT4G27010 Gene
functional annotation
Function   ribosome 60S biogenesis amino-terminal protein  
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG
Protein NP_001320074.1  NP_194431.3 
BLAST NP_001320074.1  NP_194431.3 
Orthologous [Ortholog page] AT1G72270 (ath)  LOC4337062 (osa)  LOC25488951 (mtr)  LOC100264016 (vvi)  LOC100796806 (gma)  LOC100800766 (gma)  LOC101258227 (sly)  LOC103645921 (zma)  LOC103866760 (bra) 
Subcellular
localization
wolf
nucl 4,  plas 3,  chlo 1,  cyto 1,  E.R. 1,  golg 1,  cyto_E.R. 1  (predict for NP_001320074.1)
nucl 4,  cyto 3,  plas 2,  cysk_nucl 2  (predict for NP_194431.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001320074.1)
other 9  (predict for NP_194431.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03020 RNA polymerase 4
ath03013 RNA transport 2
Genes directly connected with EMB2788 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
17.3 AT1G67120 midasin-like protein [detail] 843032
15.2 AT4G30150 Urb2/Npa2 family protein [detail] 829138
13.7 AT3G06530 ARM repeat superfamily protein [detail] 819831
12.4 NRPC2 nuclear RNA polymerase C2 [detail] 834550
11.9 ABO6 DEA(D/H)-box RNA helicase family protein [detail] 830371
11.8 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [detail] 827009
8.6 EMB2771 E3 ubiquitin ligase [detail] 830439
8.3 NRPC1 nuclear RNA polymerase C1 [detail] 836126
7.9 AT4G17610 tRNA/rRNA methyltransferase (SpoU) family protein [detail] 827480
Coexpressed
gene list		 [Coexpressed gene list for EMB2788]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253942_at
253942_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253942_at
253942_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253942_at
253942_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828809      
Refseq ID (protein) NP_001320074.1 
NP_194431.3 


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