[←][→] ath   AT4G30200 Gene
functional annotation
Function   vernalization5/VIN3-like protein  
GO BP
GO:1900111 [list] [network] positive regulation of histone H3-K9 dimethylation  (3 genes)  IDA  
GO:0032922 [list] [network] circadian regulation of gene expression  (7 genes)  IEP  
GO:0048587 [list] [network] regulation of short-day photoperiodism, flowering  (14 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (173 genes)  IPI  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO:0009908 [list] [network] flower development  (447 genes)  IEA  
GO CC
GO:0005677 [list] [network] chromatin silencing complex  (7 genes)  IDA  
GO:0031519 [list] [network] PcG protein complex  (8 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0035064 [list] [network] methylated histone binding  (14 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (288 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001190871.1  NP_194749.1  NP_849471.1  NP_974639.1 
BLAST NP_001190871.1  NP_194749.1  NP_849471.1  NP_974639.1 
Orthologous [Ortholog page] LOC4328327 (osa)  LOC7488961 (ppo)  LOC11443783 (mtr)  LOC100193423 (zma)  LOC100251391 (vvi)  LOC100502265 (zma)  LOC100794721 (gma)  LOC100819331 (gma)  VIN3 (sly)  LOC103834685 (bra)  LOC103852843 (bra)  LOC103861941 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001190871.1)
nucl 9  (predict for NP_194749.1)
nucl 9,  cyto 1  (predict for NP_849471.1)
nucl 9  (predict for NP_974639.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190871.1)
other 9  (predict for NP_194749.1)
other 8  (predict for NP_849471.1)
other 9  (predict for NP_974639.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath04712 Circadian rhythm - plant 3
Genes directly connected with VEL1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.4 CKA1 casein kinase alpha 1 [detail] 836873
5.0 AT3G26890 meiosis chromosome segregation family protein [detail] 822305
4.8 TIR1 F-box/RNI-like superfamily protein [detail] 825473
Coexpressed
gene list		 [Coexpressed gene list for VEL1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253610_at
253610_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253610_at
253610_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253610_at
253610_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829143      
Refseq ID (protein) NP_001190871.1 
NP_194749.1 
NP_849471.1 
NP_974639.1 


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