ATTED-II : GeneID search result

[←][→] ath AT4G30700 Gene

functional annotation

Function

Pentatricopeptide repeat (PPR) superfamily protein

GO BP

GO:0016554 [list] [network] cytidine to uridine editing	(21 genes)	IMP
GO:0000963 [list] [network] mitochondrial RNA processing	(23 genes)	IMP
GO:0080156 [list] [network] mitochondrial mRNA modification	(27 genes)	IMP
GO:0009451 [list] [network] RNA modification	(403 genes)	IBA

GO CC

GO:0005739 [list] [network] mitochondrion	(4405 genes)	IDA IMP ISM
GO:0009507 [list] [network] chloroplast	(5095 genes)	IDA

GO MF

GO:0008270 [list] [network] zinc ion binding

(554 genes)

IEA

KEGG

Protein

NP_194799.1

BLAST

NP_194799.1

Orthologous

[Ortholog page] LOC4340340 (osa) LOC7465970 (ppo) LOC11437873 (mtr) LOC100243341 (vvi) LOC100795074 (gma) LOC101247338 (sly) LOC103637971 (zma) LOC103852396 (bra) LOC103852481 (bra) LOC103862163 (bra)

Subcellular
localization
wolf

chlo 7, nucl 1, cyto 1, mito 1, plas 1, cyto_nucl 1, nucl_plas 1, mito_plas 1, cyto_plas 1

(predict for NP_194799.1)

Subcellular
localization
TargetP

other 4, mito 3

(predict for NP_194799.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with MEF29 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.9	AT3G03580	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	821229
8.3	AT3G13880	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	820601
8.2	AT3G58520	Ubiquitin carboxyl-terminal hydrolase family protein	[detail]	825021
6.4	SUS2	sucrose synthase 2	[detail]	834978

Coexpressed
gene list

[Coexpressed gene list for MEF29]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

253584_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

253584_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

253584_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	829193
Refseq ID (protein)	NP_194799.1

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