| functional annotation |
| Function |
POLLEN-EXPRESSED TRANSCRIPTION FACTOR 2 |
|
| GO BP |
|
GO:0070898 [list] [network] RNA polymerase III preinitiation complex assembly
|
(5 genes)
|
IBA
|
 |
|
GO:0006352 [list] [network] DNA-templated transcription, initiation
|
(56 genes)
|
IBA
|
|
|
GO:0009846 [list] [network] pollen germination
|
(67 genes)
|
IMP
|
|
|
GO:0009793 [list] [network] embryo development ending in seed dormancy
|
(547 genes)
|
IMP
|
|
|
GO:0006355 [list] [network] regulation of transcription, DNA-templated
|
(1984 genes)
|
IEA
|
|
|
| GO CC |
|
| GO MF |
|
GO:0001093 [list] [network] TFIIB-class transcription factor binding
|
(1 genes)
|
IDA
|
|
|
GO:0001006 [list] [network] RNA polymerase III type 3 promoter sequence-specific DNA binding
|
(5 genes)
|
IBA
|
|
|
GO:0070063 [list] [network] RNA polymerase binding
|
(25 genes)
|
IDA
|
|
|
GO:0042803 [list] [network] protein homodimerization activity
|
(158 genes)
|
IPI
|
|
|
GO:0008134 [list] [network] transcription factor binding
|
(173 genes)
|
IBA
|
|
|
GO:0003690 [list] [network] double-stranded DNA binding
|
(343 genes)
|
IDA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_195279.1
|
| BLAST |
NP_195279.1
|
| Orthologous |
[Ortholog page]
LOC4346140 (osa)
LOC7493571 (ppo)
LOC11417451 (mtr)
LOC100260157 (vvi)
LOC100261683 (vvi)
LOC100796841 (gma)
LOC100811830 (gma)
LOC101252255 (sly)
LOC103653218 (zma)
LOC103875157 (bra)
|
Subcellular
localization
wolf |
|
cyto 4,
nucl 3,
E.R. 1,
cysk_nucl 1
|
(predict for NP_195279.1)
|
|
Subcellular
localization
TargetP |
|
other 8
|
(predict for NP_195279.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with AT4G35540 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 7.5 |
AT5G41020 |
myb family transcription factor |
[detail] |
834104 |
| 7.3 |
AT1G55460 |
DNA/RNA-binding protein Kin17, conserved region |
[detail] |
841993 |
| 7.1 |
AT2G35540 |
DNAJ heat shock N-terminal domain-containing protein |
[detail] |
818119 |
| 6.9 |
AT5G27460 |
Tetratricopeptide repeat (TPR)-like superfamily protein |
[detail] |
832805 |
| 6.5 |
AT5G49000 |
Galactose oxidase/kelch repeat superfamily protein |
[detail] |
834959 |
| 5.5 |
AT5G18950 |
Tetratricopeptide repeat (TPR)-like superfamily protein |
[detail] |
832013 |
|
Coexpressed
gene list |
[Coexpressed gene list for AT4G35540]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
253144_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
253144_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
253144_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT4G35540 Gene
