[←][→] ath   AT4G38780 Gene
functional annotation
Function   pre-mRNA-processing-splicing factor-like protein  
GO BP
GO:0000244 [list] [network] spliceosomal tri-snRNP complex assembly  (5 genes)  IBA  
GO CC
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0030620 [list] [network] U2 snRNA binding  (3 genes)  IBA  
GO:0030623 [list] [network] U5 snRNA binding  (4 genes)  IBA  
GO:0097157 [list] [network] pre-mRNA intronic binding  (4 genes)  IBA  
GO:0030619 [list] [network] U1 snRNA binding  (6 genes)  IBA  
GO:0000386 [list] [network] second spliceosomal transesterification activity  (7 genes)  IBA  
GO:0017070 [list] [network] U6 snRNA binding  (7 genes)  IBA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_195589.2 
BLAST NP_195589.2 
Orthologous [Ortholog page] SUS2 (ath)  LOC4337900 (osa)  LOC4340248 (osa)  LOC11421219 (mtr)  LOC11425902 (mtr)  LOC100257584 (vvi)  LOC100804026 (gma)  LOC100814404 (gma)  LOC101261833 (sly)  LOC103629533 (zma)  LOC103638016 (zma)  LOC103857797 (bra)  LOC103865106 (bra)  LOC103867076 (bra) 
Subcellular
localization
wolf
cyto 7,  nucl 1,  plas 1,  vacu 1,  cysk_nucl 1  (predict for NP_195589.2)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for NP_195589.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 4
ath03440 Homologous recombination 3
ath03030 DNA replication 2
ath03420 Nucleotide excision repair 2
Genes directly connected with AT4G38780 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.9 GMI1 gamma-irradiation and mitomycin c induced 1 [detail] 832495
4.6 MIM P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 836267
4.6 AT5G08110 UBQ, helicase-c and DEAD-like helicase domain-containing protein [detail] 830705
3.4 ABCE1 RNAse l inhibitor protein 1 [detail] 820568
Coexpressed
gene list		 [Coexpressed gene list for AT4G38780]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252962_at
252962_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252962_at
252962_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252962_at
252962_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830033      
Refseq ID (protein) NP_195589.2 


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