ATTED-II : GeneID search result

[←][→] ath AT4G39420 Gene

functional annotation

Function

spatacsin carboxy-terminus protein

GO BP

GO CC

GO:0005886 [list] [network] plasma membrane	(3771 genes)	HDA
GO:0005739 [list] [network] mitochondrion	(4405 genes)	ISM

GO MF

KEGG

Protein

NP_001154293.2 NP_001328119.1 NP_001328120.1 NP_195652.5

BLAST

NP_001154293.2 NP_001328119.1 NP_001328120.1 NP_195652.5

Orthologous

[Ortholog page] LOC4325331 (osa) LOC7477138 (ppo) LOC11432180 (mtr) LOC100247348 (vvi) LOC100800361 (gma) LOC100811665 (gma) LOC101246131 (sly) LOC103644246 (zma) LOC103847160 (bra)

Subcellular
localization
wolf

nucl 4, plas 4, nucl_plas 4	(predict for NP_001154293.2)
nucl 4, plas 4, nucl_plas 4	(predict for NP_001328119.1)
plas 6, nucl 2, cyto 1, extr 1, pero 1, cyto_pero 1	(predict for NP_001328120.1)
nucl 4, plas 4, nucl_plas 4	(predict for NP_195652.5)

Subcellular
localization
TargetP

other 7	(predict for NP_001154293.2)
other 7	(predict for NP_001328119.1)
other 3	(predict for NP_001328120.1)
other 7	(predict for NP_195652.5)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT4G39420 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.7	SDG2	SET domain protein 2	[detail]	827183
8.4	AT3G52250	Duplicated homeodomain-like superfamily protein	[detail]	824390
8.0	AT5G07940	dentin sialophosphoprotein-like protein	[detail]	830688

Coexpressed
gene list

[Coexpressed gene list for AT4G39420]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252893_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252893_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252893_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	830097
Refseq ID (protein)	NP_001154293.2
	NP_001328119.1
	NP_001328120.1
	NP_195652.5

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