[←][→] ath   AT4G39680 Gene
functional annotation
Function   SAP domain-containing protein  
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03015 [list] [network] mRNA surveillance pathway (115 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001078515.1  NP_195678.1 
BLAST NP_001078515.1  NP_195678.1 
Orthologous [Ortholog page] LOC4332988 (osa)  LOC4343967 (osa)  LOC7456930 (ppo)  LOC7477106 (ppo)  LOC11408942 (mtr)  LOC11439947 (mtr)  LOC100248897 (vvi)  LOC100252593 (vvi)  LOC100381870 (zma)  LOC100502129 (zma)  LOC100786288 (gma)  LOC100816245 (gma)  LOC101245055 (sly)  LOC103635858 (zma)  LOC103835104 (bra)  LOC103851344 (bra) 
Subcellular
localization
wolf
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_001078515.1)
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_195678.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001078515.1)
other 8,  chlo 3  (predict for NP_195678.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
Genes directly connected with AT4G39680 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.9 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 839314
8.3 AT3G21215 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 821675
8.0 UBA2A UBP1-associated protein 2A [detail] 824853
7.1 AT5G65180 ENTH/VHS family protein [detail] 836642
Coexpressed
gene list		 [Coexpressed gene list for AT4G39680]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252909_at
252909_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252909_at
252909_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252909_at
252909_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830123      
Refseq ID (protein) NP_001078515.1 
NP_195678.1 


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