[←][→] ath   AT5G04280 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein  
GO BP
GO:0048026 [list] [network] positive regulation of mRNA splicing, via spliceosome  (4 genes)  IGI  
GO:0045892 [list] [network] negative regulation of transcription, DNA-templated  (253 genes)  IGI  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IEP  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP IGI  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IEP  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:1990904 [list] [network] ribonucleoprotein complex  (690 genes)  IBA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0031490 [list] [network] chromatin DNA binding  (27 genes)  IDA  
GO:0003682 [list] [network] chromatin binding  (126 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA IDA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IDA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001330677.1  NP_001330678.1  NP_001330679.1  NP_001330680.1  NP_196048.1 
BLAST NP_001330677.1  NP_001330678.1  NP_001330679.1  NP_001330680.1  NP_196048.1 
Orthologous [Ortholog page] AtRZ-1b (ath)  LOC4333731 (osa)  LOC4342599 (osa)  LOC7468443 (ppo)  LOC100191289 (zma)  LOC100261508 (vvi)  LOC100282673 (zma)  LOC100285313 (zma)  LOC100381912 (zma)  LOC100776333 (gma)  LOC100809519 (gma)  LOC101261205 (sly)  LOC101265498 (sly)  LOC103829974 (bra)  LOC103855562 (bra)  LOC112417082 (mtr) 
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 1  (predict for NP_001330677.1)
nucl 6,  chlo 2,  mito 1  (predict for NP_001330678.1)
nucl 6,  chlo 2,  mito 1  (predict for NP_001330679.1)
nucl 6,  chlo 2,  mito 1  (predict for NP_001330680.1)
chlo 5,  mito 3,  nucl 2  (predict for NP_196048.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for NP_001330677.1)
mito 7,  other 4  (predict for NP_001330678.1)
mito 7,  other 4  (predict for NP_001330679.1)
mito 7,  other 4  (predict for NP_001330680.1)
other 7  (predict for NP_196048.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 14
ath03015 mRNA surveillance pathway 5
ath03013 RNA transport 3
Genes directly connected with AtRZ-1c on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.1 RSZ22a RNA recognition motif and CCHC-type zinc finger domains containing protein [detail] 816995
10.9 CSP3 cold shock domain protein 3 [detail] 816297
10.5 RSZ22 serine/arginine-rich 22 [detail] 829285
10.4 SR34a SER/ARG-rich protein 34A [detail] 824105
9.7 RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 824518
9.0 AtRZ-1b RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 842359
8.4 ALY4 ALWAYS EARLY 4 [detail] 833750
6.6 AT1G75560 zinc knuckle (CCHC-type) family protein [detail] 843892
6.4 AT3G04590 AT hook motif DNA-binding family protein [detail] 819615
5.0 AT1G66260 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 842943
Coexpressed
gene list		 [Coexpressed gene list for AtRZ-1c]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245714_at
245714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245714_at
245714_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245714_at
245714_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830307      
Refseq ID (protein) NP_001330677.1 
NP_001330678.1 
NP_001330679.1 
NP_001330680.1 
NP_196048.1 


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