[←][→] ath   AT5G06600 Gene
functional annotation
Function   ubiquitin-specific protease 12  
GO BP
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (71 genes)  IMP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (436 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IPI ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IPI  
GO MF
GO:0004843 [list] [network] thiol-dependent ubiquitin-specific protease activity  (42 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001119179.1  NP_568171.1  NP_850783.1 
BLAST NP_001119179.1  NP_568171.1  NP_850783.1 
Orthologous [Ortholog page] UBP13 (ath)  LOC4324616 (osa)  LOC4342469 (osa)  LOC4352242 (osa)  LOC7455616 (ppo)  LOC7469919 (ppo)  LOC7486860 (ppo)  LOC7491593 (ppo)  LOC9270404 (osa)  LOC11418867 (mtr)  LOC11432874 (mtr)  LOC11443023 (mtr)  LOC100193936 (zma)  LOC100194235 (zma)  LOC100244518 (vvi)  LOC100252573 (vvi)  LOC100266796 (vvi)  LOC100337655 (gma)  LOC100381748 (zma)  LOC100383306 (zma)  LOC100383827 (zma)  LOC100778442 (gma)  LOC100781560 (gma)  LOC100800328 (gma)  LOC100810922 (gma)  LOC101248777 (sly)  LOC101255649 (sly)  LOC101257631 (sly)  LOC101266987 (sly)  LOC103651156 (zma)  LOC103845922 (bra)  LOC103847000 (bra)  LOC103850626 (bra)  LOC103855679 (bra)  LOC103859415 (bra)  LOC103870300 (bra) 
Subcellular
localization
wolf
cyto 6,  nucl 2,  chlo 1,  vacu 1  (predict for NP_001119179.1)
cyto 6,  nucl 4  (predict for NP_568171.1)
cyto 6,  nucl 4  (predict for NP_850783.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001119179.1)
other 8  (predict for NP_568171.1)
other 8  (predict for NP_850783.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with UBP12 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.5 AT3G62900 CW-type Zinc Finger [detail] 825465
9.3 UPL1 LOW protein: E3 ubiquitin ligase-like protein [detail] 842036
9.2 UBP13 ubiquitin-specific protease 13 [detail] 820364
8.9 XIK myosin family protein with Dil [detail] 832171
7.7 YAK1 YAK1-like protein 1 [detail] 833590
7.4 AT1G79570 kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [detail] 844295
7.0 EMB2754 Vacuolar sorting protein 39 [detail] 829815
Coexpressed
gene list		 [Coexpressed gene list for UBP12]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250693_at
250693_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250693_at
250693_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250693_at
250693_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830548      
Refseq ID (protein) NP_001119179.1 
NP_568171.1 
NP_850783.1 


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