[←][→] ath   AT5G08290 Gene
functional annotation
Function   mRNA splicing factor, thioredoxin-like U5 snRNP  
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IEA  
GO CC
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IBA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001331247.1  NP_196446.1 
BLAST NP_001331247.1  NP_196446.1 
Orthologous [Ortholog page] DIM1 (gma)  LOC4348949 (osa)  LOC7456307 (ppo)  LOC9268087 (osa)  LOC11421211 (mtr)  LOC11433035 (mtr)  LOC11441608 (mtr)  LOC100249310 (vvi)  LOC100282486 (zma)  LOC100780423 (gma)  LOC100792141 (gma)  LOC101263601 (sly)  LOC101265686 (sly)  LOC103847147 (bra) 
Subcellular
localization
wolf
cyto 9,  chlo 1,  extr 1  (predict for NP_001331247.1)
cyto 5,  cysk 2,  chlo 1,  nucl 1,  extr 1,  golg 1  (predict for NP_196446.1)
Subcellular
localization
TargetP
scret 7,  other 6  (predict for NP_001331247.1)
other 7,  scret 3  (predict for NP_196446.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with YLS8 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.1 PH1 pleckstrin homologue 1 [detail] 817520
7.0 MMZ3 MMS ZWEI homologue 3 [detail] 818179
6.7 UEV1D-4 ubiquitin E2 [detail] 824422
4.9 MKP2 MAPK phosphatase 2 [detail] 819784
Coexpressed
gene list		 [Coexpressed gene list for YLS8]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246006_at
246006_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246006_at
246006_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246006_at
246006_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830725      
Refseq ID (protein) NP_001331247.1 
NP_196446.1 


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