[←][→] ath   AT5G09860 Gene
functional annotation
Function   nuclear matrix protein-like protein  
GO BP
GO:0010267 [list] [network] production of ta-siRNAs involved in RNA interference  (15 genes)  IMP  
GO:0006406 [list] [network] mRNA export from nucleus  (30 genes)  IMP  
GO:0031047 [list] [network] gene silencing by RNA  (183 genes)  IMP  
GO:0009873 [list] [network] ethylene-activated signaling pathway  (191 genes)  IGI  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO:0050832 [list] [network] defense response to fungus  (517 genes)  IMP  
GO CC
GO:0000347 [list] [network] THO complex  (11 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO:0005622 [list] [network] intracellular  (21658 genes)  IGI  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001190269.1  NP_568219.1 
BLAST NP_001190269.1  NP_568219.1 
Orthologous [Ortholog page] LOC4331353 (osa)  LOC7455804 (ppo)  LOC7460257 (ppo)  LOC100250474 (vvi)  LOC100262610 (vvi)  LOC100304252 (zma)  LOC100781333 (gma)  LOC101245499 (sly)  LOC103850354 (bra)  LOC112420425 (mtr) 
Subcellular
localization
wolf
cyto 6,  nucl 1,  E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_001190269.1)
cyto 6,  nucl 1,  E.R. 1,  chlo 1,  mito 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_568219.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001190269.1)
other 6  (predict for NP_568219.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 RNA transport 2
Genes directly connected with THO1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.6 ABH1 ARM repeat superfamily protein [detail] 815840
6.1 AT3G19340 aminopeptidase (DUF3754) [detail] 821468
6.0 RFC1 replication factor C1 [detail] 832261
Coexpressed
gene list		 [Coexpressed gene list for THO1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250459_at
250459_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250459_at
250459_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250459_at
250459_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830846      
Refseq ID (protein) NP_001190269.1 
NP_568219.1 


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