[←][→] ath   AT5G13730 Gene
functional annotation
Function   sigma factor 4  
GO BP
GO:0006352 [list] [network] DNA-templated transcription, initiation  (56 genes)  TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (131 genes)  IEP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1988 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG
Protein NP_196877.1 
BLAST NP_196877.1 
Orthologous [Ortholog page] LOC11409298 (mtr)  LOC100244848 (vvi)  LOC101266372 (sly)  LOC103846548 (bra)  LOC103850892 (bra) 
Subcellular
localization
wolf
chlo 9,  plas 1,  pero 1  (predict for NP_196877.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_196877.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
Genes directly connected with SIG4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.6 CRR7 chlororespiratory reduction 7 [detail] 833917
7.3 PnsL2 PsbQ-like 2 [detail] 837974
7.1 PnsB3 NDH-dependent cyclic electron flow 1 [detail] 820871
7.0 Cpn60beta4 TCP-1/cpn60 chaperonin family protein [detail] 839164
6.5 CAF2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [detail] 838948
6.3 AT1G07440 NAD(P)-binding Rossmann-fold superfamily protein [detail] 837256
4.4 AT1G53450 epstein-barr nuclear antigen [detail] 841780
4.0 AT3G09160 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 820071
Coexpressed
gene list		 [Coexpressed gene list for SIG4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250255_at
250255_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250255_at
250255_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
250255_at
250255_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831218      
Refseq ID (protein) NP_196877.1 


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