[←][→] ath   AT5G15920 Gene
functional annotation
Function   structural maintenance of chromosomes 5  
GO BP
GO:0007062 [list] [network] sister chromatid cohesion  (35 genes)  IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (68 genes)  IEA  
GO CC
GO:0030915 [list] [network] Smc5-Smc6 complex  (8 genes)  IEA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG
Protein NP_197096.1 
BLAST NP_197096.1 
Orthologous [Ortholog page] LOC4339821 (osa)  LOC7480063 (ppo)  LOC11405711 (mtr)  LOC11409593 (mtr)  LOC11446670 (mtr)  LOC100249983 (vvi)  LOC100381612 (zma)  LOC100778678 (gma)  LOC101255831 (sly)  LOC103856172 (bra) 
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  cyto_mito 1  (predict for NP_197096.1)
Subcellular
localization
TargetP
other 8  (predict for NP_197096.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
Genes directly connected with SMC5 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.3 LINC4 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 [detail] 836706
6.5 AT4G26190 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [detail] 828725
6.2 AT3G26560 ATP-dependent RNA helicase [detail] 822264
6.1 AT3G04980 DNAJ heat shock N-terminal domain-containing protein [detail] 819658
6.0 TSL Protein kinase superfamily protein [detail] 832217
Coexpressed
gene list		 [Coexpressed gene list for SMC5]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246536_at
246536_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246536_at
246536_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246536_at
246536_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 831449      
Refseq ID (protein) NP_197096.1 


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