[←][→] ath   AT5G17920 Gene
functional annotation
Function   Cobalamin-independent synthase family protein  
GO BP
GO:0009086 [list] [network] methionine biosynthetic process  (25 genes)  IEA  
GO:0010043 [list] [network] response to zinc ion  (42 genes)  IEP  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO:0032259 [list] [network] methylation  (371 genes)  IEA  
GO CC
GO:0005777 [list] [network] peroxisome  (325 genes)  IDA  
GO:0048046 [list] [network] apoplast  (443 genes)  IDA  
GO:0005774 [list] [network] vacuolar membrane  (624 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  RCA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IBA IDA ISS  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003871 [list] [network] 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity  (3 genes)  IEA  
GO:0008705 [list] [network] methionine synthase activity  (3 genes)  IBA IDA  
GO:0005507 [list] [network] copper ion binding  (185 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)
ath00450 [list] [network] Selenocompound metabolism (18 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_001078599.1  NP_197294.1 
BLAST NP_001078599.1  NP_197294.1 
Orthologous [Ortholog page] LOC541714 (zma)  LOC541942 (zma)  LOC547643 (gma)  MS2 (ath)  MS3 (ath)  LOC4352832 (osa)  LOC4352833 (osa)  LOC7478605 (ppo)  LOC7482366 (ppo)  LOC11439549 (mtr)  LOC11442193 (mtr)  LOC25495847 (mtr)  LOC100242762 (vvi)  LOC100248500 (vvi)  LOC100286153 (zma)  LOC100775388 (gma)  LOC100776541 (gma)  LOC100779947 (gma)  LOC100802039 (gma)  LOC100807833 (gma)  LOC100811317 (gma)  LOC101250617 (sly)  ER69 (sly)  LOC103845623 (bra)  LOC103845887 (bra)  LOC103851137 (bra)  LOC103856274 (bra)  LOC103856476 (bra)  LOC103859011 (bra) 
Subcellular
localization
wolf
cyto 4,  mito 3,  chlo 2,  cyto_nucl 2,  cyto_pero 2  (predict for NP_001078599.1)
cyto 4,  mito 3,  chlo 2,  cyto_nucl 2,  cyto_pero 2  (predict for NP_197294.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for NP_001078599.1)
other 7,  mito 4  (predict for NP_197294.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00270 Cysteine and methionine metabolism 5
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath00230 Purine metabolism 3
ath00670 One carbon pool by folate 3
Genes directly connected with ATMS1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.0 SHM4 serine hydroxymethyltransferase 4 [detail] 827027
9.9 MAT3 methionine adenosyltransferase 3 [detail] 818260
9.0 MS2 methionine synthase 2 [detail] 821147
8.7 MTHFR2 methylenetetrahydrofolate reductase 2 [detail] 819022
8.3 ADK2 adenosine kinase 2 [detail] 831882
8.0 UGP1 UDP-GLUCOSE PYROPHOSPHORYLASE 1 [detail] 821313
7.9 ADK1 adenosine kinase 1 [detail] 820140
6.8 AT1G48860 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta [detail] 841308
5.6 AVP1 Inorganic H pyrophosphatase family protein [detail] 838138
Coexpressed
gene list		 [Coexpressed gene list for ATMS1]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 831660      
Refseq ID (protein) NP_001078599.1 
NP_197294.1 


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