[][] ath   At5g02840 Gene
functional annotation
Function   LHY/CCA1-like 1 Plant GARDENPlant GARDEN JBrowse
GO BP
GO:0042752 [list] [network] regulation of circadian rhythm  (61 genes)  IGI  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1277 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
KEGG
Protein NP_001031823.1  NP_001332134.1  NP_001332135.1  NP_568108.1  NP_850756.1 
BLAST NP_001031823.1  NP_001332134.1  NP_001332135.1  NP_568108.1  NP_850756.1 
Orthologous [Ortholog page] MYB118 (gma)RVE8 (ath)LOC7467599 (ppo)LOC18100248 (ppo)LOC25484055 (mtr)LOC100783482 (gma)LOC100797466 (gma)LOC100807156 (gma)LOC101253545 (sly)LOC103847419 (bra)LOC103848060 (bra)LOC103870531 (bra)
Subcellular
localization
wolf
nucl 10  (predict for NP_001031823.1)
nucl 10  (predict for NP_001332134.1)
nucl 10  (predict for NP_001332135.1)
nucl 10  (predict for NP_568108.1)
nucl 10  (predict for NP_850756.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031823.1)
other 8  (predict for NP_001332134.1)
other 8  (predict for NP_001332135.1)
other 8  (predict for NP_568108.1)
other 8  (predict for NP_850756.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with LCL1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.8 SPP1 Phosphatidic acid phosphatase (PAP2) family protein [detail] 825018
8.3 SYP23 syntaxin of plants 23 [detail] 827494
7.8 RVE8 Homeodomain-like superfamily protein [detail] 820117
7.1 AT1G55000 peptidoglycan-binding LysM domain-containing protein [detail] 841942
6.0 CIPK1 CBL-interacting protein kinase 1 [detail] 821016
Coexpressed
gene list
[Coexpressed gene list for LCL1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250972_at
250972_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250972_at
250972_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
250972_at
250972_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 831766    
Refseq ID (protein) NP_001031823.1 
NP_001332134.1 
NP_001332135.1 
NP_568108.1 
NP_850756.1 


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