[←][→] ath   AT5G22650 Gene
functional annotation
Function   histone deacetylase 2B  
GO BP
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis  (23 genes)  IMP  
GO:0009294 [list] [network] DNA mediated transformation  (26 genes)  IMP  
GO:0010162 [list] [network] seed dormancy process  (32 genes)  IBA IEP  
GO:0045892 [list] [network] negative regulation of transcription, DNA-templated  (253 genes)  IBA IDA  
GO:0048364 [list] [network] root development  (482 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA IDA TAS  
GO:0005774 [list] [network] vacuolar membrane  (624 genes)  IDA  
GO:0005618 [list] [network] cell wall  (685 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IDA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (35 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_197657.3  NP_851056.1 
BLAST NP_197657.3  NP_851056.1 
Orthologous
Subcellular
localization
wolf
nucl 5,  plas 2,  E.R. 1,  chlo 1,  vacu 1,  cyto_E.R. 1  (predict for NP_197657.3)
nucl 5,  plas 2,  E.R. 1,  chlo 1,  vacu 1,  cyto_E.R. 1  (predict for NP_851056.1)
Subcellular
localization
TargetP
other 8  (predict for NP_197657.3)
other 8  (predict for NP_851056.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03010 Ribosome 2
Genes directly connected with HD2B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.8 NOP56 NOP56-like pre RNA processing ribonucleoprotein [detail] 842063
11.4 HDA3 histone deacetylase 3 [detail] 823605
11.4 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein [detail] 819668
11.2 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family protein [detail] 818377
10.7 ATG2 metallopeptidase M24 family protein [detail] 824343
Coexpressed
gene list		 [Coexpressed gene list for HD2B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249901_at
249901_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249901_at
249901_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249901_at
249901_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832328      
Refseq ID (protein) NP_197657.3 
NP_851056.1 


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