[←][→] ath   AT5G25560 Gene
functional annotation
Function   CHY-type/CTCHY-type/RING-type Zinc finger protein  
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)
Protein NP_001190397.1  NP_001318649.1  NP_001318650.1  NP_001331055.1  NP_001331056.1  NP_197938.2 
BLAST NP_001190397.1  NP_001318649.1  NP_001318650.1  NP_001331055.1  NP_001331056.1  NP_197938.2 
Orthologous [Ortholog page] AT5G22920 (ath)  LOC4324695 (osa)  LOC4348796 (osa)  LOC7463321 (ppo)  LOC7495732 (ppo)  LOC11412063 (mtr)  LOC11429978 (mtr)  LOC25481902 (mtr)  LOC25483138 (mtr)  LOC25499342 (mtr)  LOC100192978 (zma)  LOC100241783 (vvi)  LOC100252623 (vvi)  LOC100258546 (vvi)  LOC100280509 (zma)  LOC100783915 (gma)  LOC100803569 (gma)  LOC100812023 (gma)  LOC100812709 (gma)  LOC101254223 (sly)  LOC101256801 (sly)  LOC103845501 (bra)  LOC103854743 (bra)  LOC103856536 (bra) 
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  cyto_plas 2  (predict for NP_001190397.1)
nucl 4,  cyto 4,  plas 1  (predict for NP_001318649.1)
nucl 5,  cyto 3,  plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_001318650.1)
nucl 4,  cyto 4,  plas 1  (predict for NP_001331055.1)
nucl 4,  cyto 4,  plas 1  (predict for NP_001331056.1)
nucl 4,  cyto 4,  plas 1  (predict for NP_197938.2)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for NP_001190397.1)
other 6,  chlo 3  (predict for NP_001318649.1)
other 6,  chlo 3  (predict for NP_001318650.1)
other 6,  chlo 3  (predict for NP_001331055.1)
other 6,  chlo 3  (predict for NP_001331056.1)
other 6,  chlo 3  (predict for NP_197938.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with AT5G25560 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.7 SR34b RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 828027
10.5 AT4G36980 CLK4-associating serine/arginine-rich protein [detail] 829852
9.3 AT1G26580 ELM2 domain protein [detail] 839198
8.7 AT3G02300 Regulator of chromosome condensation (RCC1) family protein [detail] 821167
8.6 RIK RS2-interacting KH protein [detail] 822600
8.6 EMB2820 Cytidine/deoxycytidylate deaminase family protein [detail] 832539
8.5 AT4G00040 Chalcone and stilbene synthase family protein [detail] 828224
8.3 AT2G25590 Plant Tudor-like protein [detail] 817098
7.0 REV1 DNA-directed DNA polymerase [detail] 834504
6.5 NF-YC12 nuclear factor Y, subunit C12 [detail] 833794
6.0 AT5G04090 histidine-tRNA ligase [detail] 830288
4.9 GDPD4 PLC-like phosphodiesterases superfamily protein [detail] 843475
4.9 AT1G19397 transmembrane protein [detail] 2745757
4.4 AT2G45920 U-box domain-containing protein [detail] 819200
4.2 AT4G06410 [detail] 28719787
Coexpressed
gene list		 [Coexpressed gene list for AT5G25560]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246897_at
246897_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246897_at
246897_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246897_at
246897_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 832631      
Refseq ID (protein) NP_001190397.1 
NP_001318649.1 
NP_001318650.1 
NP_001331055.1 
NP_001331056.1 
NP_197938.2 


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