[←][→] ath   AT5G37720 Gene
functional annotation
Function   ALWAYS EARLY 4  
GO BP
GO:0051028 [list] [network] mRNA transport  (63 genes)  IEA  
GO:0006952 [list] [network] defense response  (1420 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03015 [list] [network] mRNA surveillance pathway (115 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001078676.1  NP_198588.2 
BLAST NP_001078676.1  NP_198588.2 
Orthologous [Ortholog page] AT1G66260 (ath)  LOC4340675 (osa)  LOC4345621 (osa)  LOC11406653 (mtr)  LOC100257009 (vvi)  LOC100280157 (zma)  LOC100280336 (zma)  LOC100801491 (gma)  LOC100820344 (gma)  LOC101256343 (sly)  LOC101268859 (sly)  LOC103831096 (bra)  LOC103863747 (bra) 
Subcellular
localization
wolf
nucl 6,  mito 2,  cyto 1  (predict for NP_001078676.1)
nucl 6,  cyto 1,  mito 1  (predict for NP_198588.2)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for NP_001078676.1)
chlo 5,  other 3  (predict for NP_198588.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 10
ath03015 mRNA surveillance pathway 4
ath03013 RNA transport 2
Genes directly connected with ALY4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.5 TAF15b TBP-associated factor 15B [detail] 835960
8.4 AtRZ-1c RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 830307
7.4 CSP3 cold shock domain protein 3 [detail] 816297
7.3 AT5G66010 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 836731
6.1 AT4G00590 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [detail] 827968
5.1 AT1G66260 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 842943
4.8 AT4G17440 chromogranin (DUF1639) [detail] 827455
Coexpressed
gene list		 [Coexpressed gene list for ALY4]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 833750      
Refseq ID (protein) NP_001078676.1 
NP_198588.2 


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