ATTED-II : GeneID search result

[←][→] ath AT5G39630 Gene

functional annotation

Function

Vesicle transport v-SNARE family protein

GO BP

GO:0048280 [list] [network] vesicle fusion with Golgi apparatus	(8 genes)	IBA
GO:0006896 [list] [network] Golgi to vacuole transport	(19 genes)	IBA
GO:0042147 [list] [network] retrograde transport, endosome to Golgi	(24 genes)	IBA
GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(35 genes)	IBA TAS
GO:0006623 [list] [network] protein targeting to vacuole	(36 genes)	IBA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(84 genes)	IBA

GO CC

GO:0012507 [list] [network] ER to Golgi transport vesicle membrane	(29 genes)	IBA
GO:0031201 [list] [network] SNARE complex	(32 genes)	IBA
GO:0031902 [list] [network] late endosome membrane	(61 genes)	IBA
GO:0005789 [list] [network] endoplasmic reticulum membrane	(466 genes)	IBA
GO:0005794 [list] [network] Golgi apparatus	(1430 genes)	IBA ISM

GO MF

GO:0005484 [list] [network] SNAP receptor activity	(39 genes)	IBA
GO:0000149 [list] [network] SNARE binding	(54 genes)	IBA TAS

KEGG

ath04130 [list] [network] SNARE interactions in vesicular transport (44 genes)

Protein

NP_198779.1

BLAST

NP_198779.1

Orthologous

Subcellular
localization
wolf

golg 4, nucl 1, chlo 1, cyto 1, plas 1, vacu 1, E.R. 1, pero 1, cysk_nucl 1, E.R._vacu 1, cyto_pero 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1

(predict for NP_198779.1)

Subcellular
localization
TargetP

other 8

(predict for NP_198779.1)

Gene coexpression

Network^*for
coexpressed
genes

Coexpressed
gene list

[Coexpressed gene list for AT5G39630]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

249460_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

249460_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

249460_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	833959
Refseq ID (protein)	NP_198779.1

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