[←][→] ath   AT5G39840 Gene
functional annotation
Function   ATP-dependent RNA helicase  
GO BP
GO:0000965 [list] [network] mitochondrial RNA 3'-end processing  (5 genes)  IBA  
GO:0006401 [list] [network] RNA catabolic process  (97 genes)  IBA  
GO CC
GO:0045025 [list] [network] mitochondrial degradosome  (2 genes)  IBA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  ISM  
GO MF
KEGG
Protein NP_198800.1 
BLAST NP_198800.1 
Orthologous [Ortholog page] LOC4336047 (osa)  LOC25495300 (mtr)  LOC100285160 (zma)  LOC100777064 (gma)  LOC100777114 (gma)  LOC100853943 (vvi)  LOC101262978 (sly)  LOC103849896 (bra) 
Subcellular
localization
wolf
chlo 6,  mito 3,  cyto_mito 2  (predict for NP_198800.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for NP_198800.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G39840 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.2 AT5G09840 Putative endonuclease or glycosyl hydrolase [detail] 830844
10.7 BIR6 Pentatricopeptide repeat (PPR) superfamily protein [detail] 823983
10.6 AT5G54910 DEA(D/H)-box RNA helicase family protein [detail] 835582
9.6 EMB2794 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 814746
8.9 AT3G27550 RNA-binding CRS1 / YhbY (CRM) domain protein [detail] 822377
8.3 TRZ3 tRNAse Z3 [detail] 841647
7.9 AT1G13810 Restriction endonuclease, type II-like superfamily protein [detail] 837942
6.6 AT4G21880 Pentatricopeptide repeat (PPR) superfamily protein [detail] 828277
6.2 EMB2745 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 833967
Coexpressed
gene list		 [Coexpressed gene list for AT5G39840]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249426_at
249426_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249426_at
249426_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249426_at
249426_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 833980      
Refseq ID (protein) NP_198800.1 


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