ATTED-II : GeneID search result

[←][→] ath AT5G39980 Gene

functional annotation

Function

Tetratricopeptide repeat (TPR)-like superfamily protein

GO BP

GO:0031425 [list] [network] chloroplast RNA processing	(22 genes)	IMP
GO:0009658 [list] [network] chloroplast organization	(194 genes)	IMP

GO CC

GO:0009941 [list] [network] chloroplast envelope	(666 genes)	IDA
GO:0009570 [list] [network] chloroplast stroma	(750 genes)	IDA
GO:0009507 [list] [network] chloroplast	(5095 genes)	IBA ISM

GO MF

KEGG

Protein

NP_198814.1

BLAST

NP_198814.1

Orthologous

[Ortholog page] LOC4327403 (osa) LOC7495943 (ppo) LOC11437358 (mtr) LOC100191386 (zma) LOC100255941 (vvi) LOC100782934 (gma) LOC100784025 (gma) LOC101262164 (sly) LOC103850160 (bra)

Subcellular
localization
wolf

chlo 9

(predict for NP_198814.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_198814.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT5G39980 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
9.9	OTP81	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	817526
9.7	RARE1	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	831168
9.5	AT5G52850	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	835362
7.0	EMB175	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	831717

Coexpressed
gene list

[Coexpressed gene list for AT5G39980]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

249436_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

249436_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

249436_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	833995
Refseq ID (protein)	NP_198814.1

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