[←][→] ath   AT5G40490 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO:0048576 [list] [network] positive regulation of short-day photoperiodism, flowering  (3 genes)  IMP  
GO:0048578 [list] [network] positive regulation of long-day photoperiodism, flowering  (9 genes)  IMP  
GO:0006378 [list] [network] mRNA polyadenylation  (20 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO MF
GO:0097157 [list] [network] pre-mRNA intronic binding  (4 genes)  IDA  
GO:0003730 [list] [network] mRNA 3'-UTR binding  (14 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001331372.1  NP_198865.1 
BLAST NP_001331372.1  NP_198865.1 
Orthologous [Ortholog page] AT3G13224 (ath)  LOC4345254 (osa)  LOC4345910 (osa)  LOC7496843 (ppo)  LOC11427003 (mtr)  LOC25495139 (mtr)  LOC100217268 (zma)  LOC100240900 (vvi)  LOC100246013 (vvi)  LOC100265210 (vvi)  LOC100793209 (gma)  LOC100801373 (gma)  LOC100813165 (gma)  LOC100814490 (gma)  LOC101263479 (sly)  LOC101265253 (sly)  LOC103639292 (zma)  LOC103849754 (bra)  LOC103863998 (bra)  LOC113001701 (gma) 
Subcellular
localization
wolf
cyto 7,  mito 1,  nucl 1,  extr 1,  chlo_mito 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001331372.1)
nucl 8,  plas 1,  extr 1,  pero 1  (predict for NP_198865.1)
Subcellular
localization
TargetP
mito 4,  other 4  (predict for NP_001331372.1)
other 9  (predict for NP_198865.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G40490 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.5 AT5G46730 glycine-rich protein [detail] 834716
9.9 GTB1 global transcription factor group B1 [detail] 842855
9.7 AT3G23450 transmembrane protein [detail] 3768908
8.7 AT1G55040 zinc finger (Ran-binding) family protein [detail] 841947
8.2 AT3G07030 Alba DNA/RNA-binding protein [detail] 3768790
7.7 TAF15 TBP-associated factor 15 [detail] 841452
6.6 AT1G15830 hypothetical protein [detail] 838153
4.5 AT1G04660 glycine-rich protein [detail] 839454
Coexpressed
gene list		 [Coexpressed gene list for AT5G40490]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249357_at
249357_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249357_at
249357_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249357_at
249357_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834047      
Refseq ID (protein) NP_001331372.1 
NP_198865.1 


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