[←][→] ath   AT5G42190 Gene
functional annotation
Function   E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein  
GO BP
GO:0016032 [list] [network] viral process  (63 genes)  IEA  
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (66 genes)  IBA  
GO:0007059 [list] [network] chromosome segregation  (108 genes)  IEA  
GO:0009873 [list] [network] ethylene-activated signaling pathway  (191 genes)  IEA  
GO:0009734 [list] [network] auxin-activated signaling pathway  (196 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (436 genes)  TAS  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  IGI  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IEA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (68 genes)  NAS  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA NAS  
GO MF
GO:0097602 [list] [network] cullin family protein binding  (25 genes)  IBA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)
ath04141 [list] [network] Protein processing in endoplasmic reticulum (211 genes)
Protein NP_568603.1 
BLAST NP_568603.1 
Orthologous [Ortholog page] SK14 (ath)  SK16 (ath)  MEO (ath)  SK3 (ath)  SK15 (ath)  SK18 (ath)  SK4 (ath)  SKP1 (ath)  LOC4347721 (osa)  LOC7470408 (ppo)  LOC7485611 (ppo)  LOC7496912 (ppo)  LOC9270098 (osa)  LOC11429415 (mtr)  LOC11429668 (mtr)  LOC11430287 (mtr)  LOC11433393 (mtr)  LOC11438280 (mtr)  LOC11445600 (mtr)  LOC25490092 (mtr)  LOC25499058 (mtr)  LOC25499060 (mtr)  LOC25499062 (mtr)  LOC25499072 (mtr)  LOC100193107 (zma)  LOC100252349 (vvi)  LOC100306458 (gma)  LOC100527683 (gma)  LOC100798104 (gma)  LOC100809769 (gma)  LOC101243954 (sly)  LOC101246287 (sly)  LOC101246572 (sly)  LOC101246871 (sly)  LOC101268040 (sly)  SKP1 (sly)  LOC103830630 (bra)  LOC103832041 (bra)  LOC103848439 (bra)  LOC103852996 (bra)  LOC103872814 (bra) 
Subcellular
localization
wolf
cyto 4,  nucl 3,  cysk_nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_568603.1)
Subcellular
localization
TargetP
other 8  (predict for NP_568603.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00620 Pyruvate metabolism 2
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with AT5G42190 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.3 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I family protein [detail] 837330
5.8 MMZ3 MMS ZWEI homologue 3 [detail] 818179
5.5 GLY2 Metallo-hydrolase/oxidoreductase superfamily protein [detail] 820255
Coexpressed
gene list		 [Coexpressed gene list for AT5G42190]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249228_at
249228_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249228_at
249228_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249228_at
249228_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834224      
Refseq ID (protein) NP_568603.1 


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