[←][→] ath   AT5G42940 Gene
functional annotation
Function   RING/U-box superfamily protein  
GO BP
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IBA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001330419.1  NP_199108.1 
BLAST NP_001330419.1  NP_199108.1 
Orthologous [Ortholog page] MBR1 (ath)  MBR2 (ath)  AT5G67120 (ath)  AT1G45180 (ath)  LOC7462870 (ppo)  LOC7465027 (ppo)  LOC7490042 (ppo)  LOC9272591 (osa)  LOC11405780 (mtr)  LOC11409365 (mtr)  LOC11411925 (mtr)  LOC11414526 (mtr)  LOC11426708 (mtr)  LOC11446940 (mtr)  LOC100247468 (vvi)  LOC100258840 (vvi)  LOC100267740 (vvi)  LOC100281500 (zma)  LOC100383211 (zma)  LOC100783014 (gma)  LOC100784575 (gma)  LOC100791026 (gma)  LOC100809024 (gma)  LOC100820322 (gma)  LOC101249818 (sly)  LOC101252535 (sly)  LOC101260877 (sly)  LOC101261170 (sly)  LOC101262398 (sly)  LOC103828003 (bra)  LOC103829538 (bra)  LOC103833112 (bra)  LOC103839267 (bra)  LOC103844361 (bra)  LOC103847996 (bra)  LOC104645905 (sly)  LOC106796770 (gma)  LOC109943116 (zma)  LOC112940518 (sly) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001330419.1)
nucl 10  (predict for NP_199108.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001330419.1)
other 7  (predict for NP_199108.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT5G42940 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 AT3G62240 RING/U-box superfamily protein [detail] 825397
6.7 BPM2 BTB-POZ and MATH domain 2 [detail] 819793
6.3 VOZ2 vascular plant one zinc finger protein 2 [detail] 818841
5.3 GCH GTP cyclohydrolase II [detail] 836551
Coexpressed
gene list		 [Coexpressed gene list for AT5G42940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249171_at
249171_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249171_at
249171_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249171_at
249171_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834306      
Refseq ID (protein) NP_001330419.1 
NP_199108.1 


The preparation time of this page was 0.4 [sec].