[←][→] ath   AT5G44200 Gene
functional annotation
Function   CAP-binding protein 20  
GO BP
GO:0031053 [list] [network] primary miRNA processing  (12 genes)  IMP  
GO:0000394 [list] [network] RNA splicing, via endonucleolytic cleavage and ligation  (14 genes)  IMP  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO:0016070 [list] [network] RNA metabolic process  (1305 genes)  TAS  
GO CC
GO:0005846 [list] [network] nuclear cap binding complex  (3 genes)  IBA  
GO:0005845 [list] [network] mRNA cap binding complex  (4 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IEA  
GO MF
GO:0000339 [list] [network] RNA cap binding  (9 genes)  IBA IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03015 [list] [network] mRNA surveillance pathway (115 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001078705.1  NP_199233.1 
BLAST NP_001078705.1  NP_199233.1 
Orthologous [Ortholog page] LOC4329963 (osa)  LOC7469563 (ppo)  LOC25487697 (mtr)  LOC100265980 (vvi)  LOC100280855 (zma)  LOC100283725 (zma)  LOC100776217 (gma)  LOC100789535 (gma)  LOC101268545 (sly)  LOC103827919 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for NP_001078705.1)
nucl 6,  cyto 3  (predict for NP_199233.1)
Subcellular
localization
TargetP
mito 6,  other 5  (predict for NP_001078705.1)
mito 6,  other 5  (predict for NP_199233.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03020 RNA polymerase 2
ath03010 Ribosome 2
Genes directly connected with CBP20 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 AT5G42770 Maf-like protein [detail] 834287
6.9 NRPB6A RNA polymerase Rpb6 [detail] 835269
6.7 AT1G20580 Small nuclear ribonucleoprotein family protein [detail] 838647
5.6 AL6 alfin-like 6 [detail] 814776
Coexpressed
gene list		 [Coexpressed gene list for CBP20]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249036_at
249036_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249036_at
249036_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249036_at
249036_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834443      
Refseq ID (protein) NP_001078705.1 
NP_199233.1 


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