[←][→] ath   AT5G44500 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0005687 [list] [network] U4 snRNP  (9 genes)  IBA  
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IBA  
GO:0005685 [list] [network] U1 snRNP  (17 genes)  IBA  
GO:0071004 [list] [network] U2-type prespliceosome  (24 genes)  IBA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0005686 [list] [network] U2 snRNP  (32 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001032011.1  NP_199263.1 
BLAST NP_001032011.1  NP_199263.1 
Orthologous [Ortholog page] smB (ath)  LOC9270807 (osa)  LOC11431976 (mtr)  LOC25501710 (mtr)  LOC100257709 (vvi)  LOC100272538 (zma)  LOC100282140 (zma)  LOC100780500 (gma)  LOC100786807 (gma)  LOC101262959 (sly)  LOC103858296 (bra) 
Subcellular
localization
wolf
mito 4,  chlo 3,  cyto 2,  cyto_nucl 2  (predict for NP_001032011.1)
mito 4,  chlo 3,  cyto 2,  cyto_nucl 2  (predict for NP_199263.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_001032011.1)
mito 3  (predict for NP_199263.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
Genes directly connected with AT5G44500 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.2 smB small nuclear ribonucleoprotein associated protein B [detail] 827792
5.0 HMGA high mobility group A [detail] 838055
4.9 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein [detail] 828071
4.7 WPP1 WPP domain protein 1 [detail] 834323
4.2 AT5G37890 Protein with RING/U-box and TRAF-like domain [detail] 833768
Coexpressed
gene list		 [Coexpressed gene list for AT5G44500]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249003_at
249003_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249003_at
249003_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249003_at
249003_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834477      
Refseq ID (protein) NP_001032011.1 
NP_199263.1 


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