[←][→] ath   AT5G46860 Gene
functional annotation
Function   Syntaxin/t-SNARE family protein  
GO BP
GO:0009660 [list] [network] amyloplast organization  (3 genes)  IMP  
GO:0009959 [list] [network] negative gravitropism  (18 genes)  IMP  
GO:0045324 [list] [network] late endosome to vacuole transport  (27 genes)  IGI  
GO:0006906 [list] [network] vesicle fusion  (30 genes)  IBA  
GO:0048278 [list] [network] vesicle docking  (37 genes)  IBA  
GO:0061025 [list] [network] membrane fusion  (49 genes)  TAS  
GO:0007033 [list] [network] vacuole organization  (54 genes)  IGI  
GO:0010118 [list] [network] stomatal movement  (59 genes)  IMP  
GO:0006886 [list] [network] intracellular protein transport  (516 genes)  IBA TAS  
GO CC
GO:0030140 [list] [network] trans-Golgi network transport vesicle  (15 genes)  TAS  
GO:0031201 [list] [network] SNARE complex  (32 genes)  IBA  
GO:0031902 [list] [network] late endosome membrane  (61 genes)  IEA  
GO:0005770 [list] [network] late endosome  (91 genes)  TAS  
GO:0009705 [list] [network] plant-type vacuole membrane  (124 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (169 genes)  IDA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0012505 [list] [network] endomembrane system  (2531 genes)  IBA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IBA  
GO MF
GO:0005484 [list] [network] SNAP receptor activity  (39 genes)  IBA TAS  
GO:0000149 [list] [network] SNARE binding  (54 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_568671.1 
BLAST NP_568671.1 
Orthologous [Ortholog page] LOC547656 (gma)  SYP23 (ath)  LOC4327713 (osa)  LOC4330446 (osa)  LOC7456087 (ppo)  LOC11424830 (mtr)  LOC11443508 (mtr)  LOC100191223 (zma)  LOC100194315 (zma)  LOC100249411 (vvi)  LOC100257399 (vvi)  LOC100383665 (zma)  LOC100796477 (gma)  LOC100810149 (gma)  LOC100811200 (gma)  LOC101246152 (sly)  LOC101248450 (sly)  LOC101259184 (sly)  LOC101264234 (sly)  LOC101264438 (sly)  LOC103827698 (bra)  LOC103840170 (bra)  LOC103853750 (bra)  LOC103855658 (bra)  LOC103860939 (bra) 
Subcellular
localization
wolf
cyto 4,  golg 2,  cyto_nucl 2,  mito 1,  plas 1,  vacu 1,  E.R. 1,  pero 1,  E.R._vacu 1,  E.R._plas 1,  mito_plas 1  (predict for NP_568671.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for NP_568671.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with VAM3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.5 SGR4 Vesicle transport v-SNARE family protein [detail] 833947
6.3 AT5G51570 SPFH/Band 7/PHB domain-containing membrane-associated protein family [detail] 835231
6.1 GF14 PHI GF14 protein phi chain [detail] 840403
6.1 AT5G03460 transmembrane protein [detail] 831829
5.9 ATG8D Ubiquitin-like superfamily protein [detail] 815112
5.8 AT5G04170 Calcium-binding EF-hand family protein [detail] 830295
5.7 AT4G30240 Syntaxin/t-SNARE family protein [detail] 829147
4.9 VRN1 AP2/B3-like transcriptional factor family protein [detail] 821432
Coexpressed
gene list		 [Coexpressed gene list for VAM3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248813_at
248813_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248813_at
248813_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248813_at
248813_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834730      
Refseq ID (protein) NP_568671.1 


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