[←][→] ath   AT5G48150 Gene
functional annotation
Function   GRAS family transcription factor  
GO BP
GO:0009585 [list] [network] red, far-red light phototransduction  (54 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (71 genes)  IMP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (796 genes)  IBA  
GO:0044212 [list] [network] transcription regulatory region DNA binding  (871 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IBA ISS  
KEGG
Protein NP_001332482.1  NP_001332483.1  NP_199626.1  NP_974903.1 
BLAST NP_001332482.1  NP_001332483.1  NP_199626.1  NP_974903.1 
Orthologous [Ortholog page] SCL21 (ath)  SCL5 (ath)  LOC4331920 (osa)  LOC4343735 (osa)  LOC4348466 (osa)  LOC7468554 (ppo)  LOC7487530 (ppo)  LOC11418702 (mtr)  LOC100250258 (vvi)  LOC100261403 (vvi)  LOC100281447 (zma)  LOC100383464 (zma)  LOC100384069 (zma)  LOC100502252 (zma)  LOC100796496 (gma)  LOC100808300 (gma)  LOC101252411 (sly)  LOC101253917 (sly)  LOC103828848 (bra)  LOC103837238 (bra)  PAT1 (bra)  LOC103871334 (bra)  LOC103872411 (bra)  LOC103874930 (bra) 
Subcellular
localization
wolf
nucl 3,  chlo 2,  cyto 2,  cysk_nucl 2  (predict for NP_001332482.1)
nucl 3,  chlo 2,  cyto 2,  cysk_nucl 2  (predict for NP_001332483.1)
nucl 3,  chlo 2,  cyto 2,  cysk_nucl 2  (predict for NP_199626.1)
nucl 3,  chlo 2,  cyto 2,  cysk_nucl 2  (predict for NP_974903.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001332482.1)
other 6  (predict for NP_001332483.1)
other 6  (predict for NP_199626.1)
other 6  (predict for NP_974903.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
Genes directly connected with PAT1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.1 IAA7 indole-3-acetic acid 7 [detail] 821879
4.6 PIN7 Auxin efflux carrier family protein [detail] 838916
4.5 AT3G01490 Protein kinase superfamily protein [detail] 821136
Coexpressed
gene list		 [Coexpressed gene list for PAT1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248689_at
248689_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248689_at
248689_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248689_at
248689_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834867      
Refseq ID (protein) NP_001332482.1 
NP_001332483.1 
NP_199626.1 
NP_974903.1 


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