[←][→] ath   AT5G48560 Gene
functional annotation
Function   basic helix-loop-helix (bHLH) DNA-binding superfamily protein  
GO BP
GO:0009637 [list] [network] response to blue light  (98 genes)  IDA  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (570 genes)  IEA  
GO:0043565 [list] [network] sequence-specific DNA binding  (796 genes)  IBA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IBA ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001330141.1  NP_199667.1 
BLAST NP_001330141.1  NP_199667.1 
Orthologous [Ortholog page] AT3G07340 (ath)  LOC4324327 (osa)  LOC4346087 (osa)  LOC4347486 (osa)  LOC7462032 (ppo)  LOC7471175 (ppo)  LOC7488588 (ppo)  LOC11419890 (mtr)  LOC25498190 (mtr)  LOC100193765 (zma)  LOC100216628 (zma)  LOC100259005 (vvi)  LOC100274062 (zma)  LOC100278938 (zma)  LOC100285547 (zma)  LOC100502193 (zma)  LOC100776143 (gma)  LOC100787699 (gma)  LOC100801233 (gma)  LOC100812081 (gma)  LOC101262401 (sly)  LOC101263721 (sly)  LOC101265273 (sly)  LOC101268319 (sly)  LOC103649906 (zma)  LOC103854544 (bra)  LOC103870678 (bra)  LOC103874966 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001330141.1)
nucl 10  (predict for NP_199667.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001330141.1)
other 8  (predict for NP_199667.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT5G48560 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.7 RHD2 NADPH/respiratory burst oxidase protein D [detail] 835179
4.6 WRKY36 WRKY DNA-binding protein 36 [detail] 843317
4.4 AT1G77330 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [detail] 844069
Coexpressed
gene list		 [Coexpressed gene list for AT5G48560]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248708_at
248708_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248708_at
248708_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248708_at
248708_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834912      
Refseq ID (protein) NP_001330141.1 
NP_199667.1 


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