[←][→] ath   AT5G53120 Gene
functional annotation
Function   spermidine synthase 3  
GO BP
GO:0006597 [list] [network] spermine biosynthetic process  (5 genes)  IEA IMP  
GO:0006596 [list] [network] polyamine biosynthetic process  (16 genes)  IDA  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  TAS  
GO MF
GO:0016768 [list] [network] spermine synthase activity  (2 genes)  IDA IEA IMP  
GO:0004766 [list] [network] spermidine synthase activity  (3 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)
ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00480 [list] [network] Glutathione metabolism (102 genes)
Protein NP_001078748.1  NP_001078749.1  NP_001190527.1  NP_001332707.1  NP_568785.1  NP_851178.1  NP_851179.1 
BLAST NP_001078748.1  NP_001078749.1  NP_001190527.1  NP_001332707.1  NP_568785.1  NP_851178.1  NP_851179.1 
Orthologous [Ortholog page] SPM1 (sly)  LOC732743 (zma)  LOC4328910 (osa)  LOC4341195 (osa)  LOC7489825 (ppo)  LOC11417417 (mtr)  LOC25482358 (mtr)  LOC100232840 (vvi)  LOC100279222 (zma)  LOC100282933 (zma)  LOC100815244 (gma)  LOC100816988 (gma)  LOC103844792 (bra)  LOC103852054 (bra) 
Subcellular
localization
wolf
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_001078748.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_001078749.1)
cyto 7,  nucl 1,  cysk 1,  nucl_plas 1,  E.R._vacu 1  (predict for NP_001190527.1)
cyto 9,  chlo 1  (predict for NP_001332707.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_568785.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_851178.1)
cyto 6,  cysk 2,  chlo 1,  E.R._vacu 1  (predict for NP_851179.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078748.1)
other 8  (predict for NP_001078749.1)
other 8  (predict for NP_001190527.1)
other 8  (predict for NP_001332707.1)
other 8  (predict for NP_568785.1)
other 8  (predict for NP_851178.1)
other 8  (predict for NP_851179.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
ath03050 Proteasome 3
ath00480 Glutathione metabolism 2
Genes directly connected with SPDS3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.8 ATS9 non-ATPase subunit 9 [detail] 839789
4.7 AtCDC48B ATPase, AAA-type, CDC48 protein [detail] 824489
4.6 LACS8 AMP-dependent synthetase and ligase family protein [detail] 814974
4.6 EULS3 hydroxyproline-rich glycoprotein family protein [detail] 818491
Coexpressed
gene list		 [Coexpressed gene list for SPDS3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248248_at
248248_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248248_at
248248_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248248_at
248248_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835392      
Refseq ID (protein) NP_001078748.1 
NP_001078749.1 
NP_001190527.1 
NP_001332707.1 
NP_568785.1 
NP_851178.1 
NP_851179.1 


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