[←][→] ath   AT5G53620 Gene
functional annotation
Function   RNA polymerase II degradation factor  
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG
Protein NP_001078752.1  NP_568795.1  NP_851184.1 
BLAST NP_001078752.1  NP_568795.1  NP_851184.1 
Orthologous [Ortholog page] LOC4346207 (osa)  LOC7496432 (ppo)  LOC11430812 (mtr)  LOC100252015 (vvi)  LOC100383560 (zma)  LOC100384829 (zma)  LOC100792159 (gma)  LOC100795537 (gma)  LOC101246515 (sly)  LOC103857070 (bra)  LOC103857230 (bra) 
Subcellular
localization
wolf
nucl 5,  cyto_nucl 3,  chlo 3,  mito 1  (predict for NP_001078752.1)
nucl 5,  cyto_nucl 3,  chlo 3,  mito 1  (predict for NP_568795.1)
nucl 5,  cyto_nucl 3,  chlo 3,  mito 1  (predict for NP_851184.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001078752.1)
other 4  (predict for NP_568795.1)
other 4  (predict for NP_851184.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 RNA transport 5
ath03040 Spliceosome 2
Genes directly connected with AT5G53620 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.1 AT3G62940 Cysteine proteinases superfamily protein [detail] 825469
6.8 EIF3A eukaryotic translation initiation factor 3A [detail] 826746
6.7 ABH1 ARM repeat superfamily protein [detail] 815840
6.0 AT2G47090 zinc ion binding/nucleic acid binding protein [detail] 819322
5.5 HEN1 double-stranded RNA binding protein-related / DsRBD protein-like protein [detail] 827839
Coexpressed
gene list		 [Coexpressed gene list for AT5G53620]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248223_at
248223_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248223_at
248223_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248223_at
248223_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835444      
Refseq ID (protein) NP_001078752.1 
NP_568795.1 
NP_851184.1 


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