[←][→] ath   AT5G55550 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_001190546.1  NP_001331842.1  NP_001331843.1  NP_001331844.1  NP_001331845.1  NP_001331846.1  NP_001331847.1  NP_001331848.1  NP_568826.1  NP_851195.1  NP_974937.1 
BLAST NP_001190546.1  NP_001331842.1  NP_001331843.1  NP_001331844.1  NP_001331845.1  NP_001331846.1  NP_001331847.1  NP_001331848.1  NP_568826.1  NP_851195.1  NP_974937.1 
Orthologous [Ortholog page] AT3G07810 (ath)  AT4G26650 (ath)  AT5G47620 (ath)  LOC4343740 (osa)  LOC4350986 (osa)  LOC7458263 (ppo)  LOC7458520 (ppo)  LOC7471858 (ppo)  LOC7485083 (ppo)  LOC11416649 (mtr)  LOC11424064 (mtr)  LOC11438007 (mtr)  LOC100216861 (zma)  LOC100246008 (vvi)  LOC100267443 (vvi)  LOC100273889 (zma)  LOC100279976 (zma)  LOC100788515 (gma)  LOC100794390 (gma)  LOC100795907 (gma)  LOC100799330 (gma)  LOC100805131 (gma)  LOC100814628 (gma)  LOC101250612 (sly)  LOC101256558 (sly)  LOC101260293 (sly)  LOC101260528 (sly)  LOC101261462 (sly)  LOC101266100 (sly)  LOC103632085 (zma)  LOC103647784 (zma)  LOC103827631 (bra)  LOC103834000 (bra)  LOC103839516 (bra)  LOC103849048 (bra)  LOC103853827 (bra)  LOC103856982 (bra)  LOC103859241 (bra)  LOC103861645 (bra)  LOC103866428 (bra)  LOC103870631 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001190546.1)
nucl 10  (predict for NP_001331842.1)
nucl 10  (predict for NP_001331843.1)
nucl 10  (predict for NP_001331844.1)
nucl 10  (predict for NP_001331845.1)
nucl 10  (predict for NP_001331846.1)
nucl 10  (predict for NP_001331847.1)
nucl 10  (predict for NP_001331848.1)
nucl 10  (predict for NP_568826.1)
nucl 10  (predict for NP_851195.1)
nucl 10  (predict for NP_974937.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190546.1)
other 9  (predict for NP_001331842.1)
other 9  (predict for NP_001331843.1)
other 9  (predict for NP_001331844.1)
other 9  (predict for NP_001331845.1)
other 9  (predict for NP_001331846.1)
other 9  (predict for NP_001331847.1)
other 9  (predict for NP_001331848.1)
other 9  (predict for NP_568826.1)
other 9  (predict for NP_851195.1)
other 9  (predict for NP_974937.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
Genes directly connected with AT5G55550 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.8 XBAT32 hypothetical protein [detail] 835882
4.6 ULP1D UB-like protease 1D [detail] 842317
4.6 AT1G61850 phospholipase A I-like protein [detail] 842482
4.5 AT4G36860 LIM domain-containing protein [detail] 829839
Coexpressed
gene list		 [Coexpressed gene list for AT5G55550]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248063_at
248063_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248063_at
248063_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248063_at
248063_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835649      
Refseq ID (protein) NP_001190546.1 
NP_001331842.1 
NP_001331843.1 
NP_001331844.1 
NP_001331845.1 
NP_001331846.1 
NP_001331847.1 
NP_001331848.1 
NP_568826.1 
NP_851195.1 
NP_974937.1 


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