ATTED-II : GeneID search result

[←][→] ath AT5G56340 Gene

functional annotation

Function

RING/U-box superfamily protein

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

ISM

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity

(204 genes)

IEA

KEGG

Protein

NP_200445.1

BLAST

NP_200445.1

Orthologous

[Ortholog page] AT3G13430 (ath) AT4G26400 (ath) AT1G55530 (ath) LOC4332701 (osa) LOC4334547 (osa) LOC4339152 (osa) LOC7461340 (ppo) LOC7483225 (ppo) LOC7489682 (ppo) LOC11433228 (mtr) LOC100191157 (zma) LOC100250148 (vvi) LOC100272564 (zma) LOC100282229 (zma) LOC100283571 (zma) LOC100784876 (gma) LOC101268503 (sly) LOC103832581 (bra) LOC103845076 (bra) LOC103856934 (bra) LOC103861624 (bra) LOC103866098 (bra) LOC103868391 (bra) LOC103870136 (bra) LOC103871038 (bra)

Subcellular
localization
wolf

nucl 10

(predict for NP_200445.1)

Subcellular
localization
TargetP

other 7

(predict for NP_200445.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with ATCRT1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.4	AT1G67060	peptidase M50B-like protein	[detail]	843026
4.7	AT3G52800	A20/AN1-like zinc finger family protein	[detail]	824446
4.7	AT2G21120	magnesium transporter, putative (DUF803)	[detail]	816647
4.5	AT2G28080	UDP-Glycosyltransferase superfamily protein	[detail]	817352

Coexpressed
gene list

[Coexpressed gene list for ATCRT1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

248014_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

248014_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

248014_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	835734
Refseq ID (protein)	NP_200445.1

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