[←][→] ath   AT5G57160 Gene
functional annotation
Function   DNA ligase IV  
GO BP
GO:0015074 [list] [network] DNA integration  (3 genes)  IMP  
GO:0006297 [list] [network] nucleotide-excision repair, DNA gap filling  (4 genes)  IBA  
GO:0051103 [list] [network] DNA ligation involved in DNA repair  (4 genes)  IBA  
GO:0010165 [list] [network] response to X-ray  (8 genes)  IMP  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (16 genes)  IBA IMP  
GO:0071897 [list] [network] DNA biosynthetic process  (23 genes)  IEA  
GO:0000723 [list] [network] telomere maintenance  (36 genes)  IMP  
GO:0006302 [list] [network] double-strand break repair  (108 genes)  IMP  
GO:0006260 [list] [network] DNA replication  (120 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (143 genes)  IEA  
GO:0006974 [list] [network] cellular response to DNA damage stimulus  (329 genes)  IMP  
GO CC
GO:0032807 [list] [network] DNA ligase IV complex  (3 genes)  IBA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (4 genes)  IBA IDA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IBA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03450 [list] [network] Non-homologous end-joining (8 genes)
Protein NP_001332576.1  NP_568851.2 
BLAST NP_001332576.1  NP_568851.2 
Orthologous [Ortholog page] LOC7484065 (ppo)  LOC9269006 (osa)  LOC11441582 (mtr)  LOC100258105 (vvi)  LOC100816002 (gma)  LOC101266429 (sly)  LOC103645969 (zma)  LOC103845154 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001332576.1)
nucl 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_568851.2)
Subcellular
localization
TargetP
other 5  (predict for NP_001332576.1)
other 5  (predict for NP_568851.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03450 Non-homologous end-joining 2
Genes directly connected with ATLIG4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.5 PRP40B pre-mRNA-processing protein 40B [detail] 821504
6.3 RAD50 DNA repair-recombination protein (RAD50) [detail] 817756
6.0 HUB2 histone mono-ubiquitination 2 [detail] 841968
Coexpressed
gene list		 [Coexpressed gene list for ATLIG4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247939_at
247939_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247939_at
247939_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247939_at
247939_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835822      
Refseq ID (protein) NP_001332576.1 
NP_568851.2 


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