ATTED-II : GeneID search result

[←][→] ath AT5G59900 Gene

functional annotation

Function

Pentatricopeptide repeat (PPR) superfamily protein

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5095 genes)

ISM

GO MF

KEGG

Protein

NP_200798.1

BLAST

NP_200798.1

Orthologous

[Ortholog page] LOC7465126 (ppo) LOC11441177 (mtr) LOC100263886 (vvi) LOC100797093 (gma) LOC101268449 (sly) LOC102664565 (gma) LOC103845412 (bra)

Subcellular
localization
wolf

chlo 5, chlo_mito 4, mito 3, cyto_mito 2

(predict for NP_200798.1)

Subcellular
localization
TargetP

mito 3, chlo 3

(predict for NP_200798.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT5G59900 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.3	AT3G49730	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	28719394
8.3	AT5G15010	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	831353
7.5	PPR40	pentatricopeptide (PPR) domain protein 40	[detail]	820944
7.0	LDL2	LSD1-like2	[detail]	820577
6.3	AT5G47360	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	834783
5.8	AT1G30290	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	839909
5.8	AT3G61360	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	825308
5.6	AT1G64580	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	842766

Coexpressed
gene list

[Coexpressed gene list for AT5G59900]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

247701_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

247701_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

247701_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	836112
Refseq ID (protein)	NP_200798.1

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