| functional annotation |
| Function |
Regulator of chromosome condensation (RCC1) family protein |
|
| GO BP |
|
GO:0072702 [list] [network] response to methyl methanesulfonate
|
(2 genes)
|
IEP
|
 |
|
GO:0032981 [list] [network] mitochondrial respiratory chain complex I assembly
|
(20 genes)
|
IMP
|
|
|
GO:2001020 [list] [network] regulation of response to DNA damage stimulus
|
(40 genes)
|
IMP
|
|
|
GO:0009788 [list] [network] negative regulation of abscisic acid-activated signaling pathway
|
(54 genes)
|
IMP
|
|
|
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem
|
(173 genes)
|
IMP
|
|
|
GO:0009738 [list] [network] abscisic acid-activated signaling pathway
|
(194 genes)
|
IEA
|
|
|
GO:0008380 [list] [network] RNA splicing
|
(272 genes)
|
IMP
|
|
|
GO:0006974 [list] [network] cellular response to DNA damage stimulus
|
(329 genes)
|
IEA
|
|
|
GO:0006397 [list] [network] mRNA processing
|
(376 genes)
|
IEA
|
|
|
| GO CC |
|
| GO MF |
|
| KEGG |
|
|
| Protein |
NP_001078775.1
NP_001330471.1
NP_200895.2
NP_974971.2
|
| BLAST |
NP_001078775.1
NP_001330471.1
NP_200895.2
NP_974971.2
|
| Orthologous |
[Ortholog page]
LOC9267369 (osa)
LOC25498137 (mtr)
LOC25499947 (mtr)
LOC100260362 (vvi)
LOC100277821 (zma)
LOC100808855 (gma)
LOC101261136 (sly)
LOC103860545 (bra)
|
Subcellular
localization
wolf |
|
nucl 4,
cyto 3,
chlo 2,
nucl_plas 2
|
(predict for NP_001078775.1)
|
|
mito 7,
chlo_mito 4,
chlo 1
|
(predict for NP_001330471.1)
|
|
mito 6,
chlo_mito 4,
nucl 2
|
(predict for NP_200895.2)
|
|
mito 6,
chlo_mito 4,
nucl 2,
chlo 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_974971.2)
|
|
Subcellular
localization
TargetP |
|
mito 7,
other 3
|
(predict for NP_001078775.1)
|
|
mito 9
|
(predict for NP_001330471.1)
|
|
mito 9
|
(predict for NP_200895.2)
|
|
mito 9
|
(predict for NP_974971.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with RUG3 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 8.6 |
AT1G07615 |
GTP-binding protein Obg/CgtA |
[detail] |
5007670 |
| 7.5 |
AT1G01920 |
SET domain-containing protein |
[detail] |
839313 |
| 6.7 |
AT3G28700 |
NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) |
[detail] |
822500 |
| 5.9 |
CPSF30 |
cleavage and polyadenylation specificity factor 30 |
[detail] |
839925 |
| 5.2 |
AT4G22760 |
Tetratricopeptide repeat (TPR)-like superfamily protein |
[detail] |
828375 |
| 4.8 |
AT3G54970 |
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein |
[detail] |
824662 |
| 4.7 |
AT4G13330 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
[detail] |
826963 |
|
Coexpressed
gene list |
[Coexpressed gene list for RUG3]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
247598_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
247598_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
247598_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT5G60870 Gene
