ATTED-II : GeneID search result

[←][→] ath AT5G66350 Gene

functional annotation

Function

Lateral root primordium (LRP) protein-like protein

GO BP

GO:0009938 [list] [network] negative regulation of gibberellic acid mediated signaling pathway	(15 genes)	IDA
GO:0009851 [list] [network] auxin biosynthetic process	(44 genes)	IEA
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway	(71 genes)	TAS
GO:0048653 [list] [network] anther development	(75 genes)	IGI
GO:0009739 [list] [network] response to gibberellin	(154 genes)	IMP
GO:0009734 [list] [network] auxin-activated signaling pathway	(196 genes)	IEA
GO:0009555 [list] [network] pollen development	(337 genes)	IGI
GO:0045893 [list] [network] positive regulation of transcription, DNA-templated	(495 genes)	IBA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA ISM TAS

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(122 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	TAS
GO:0003677 [list] [network] DNA binding	(2280 genes)	IBA
GO:0046872 [list] [network] metal ion binding	(3180 genes)	IEA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_001330898.1 NP_001330899.1 NP_201436.1

BLAST

NP_001330898.1 NP_001330899.1 NP_201436.1

Orthologous

[Ortholog page] SRS4 (ath) SRS3 (ath) STY1 (ath) STY2 (ath) SRS8 (ath) SRS7 (ath) SRS5 (ath) LOC4342046 (osa) LOC4347669 (osa) LOC7456348 (ppo) LOC7490677 (ppo) LOC7493939 (ppo) LOC9269394 (osa) LOC11419224 (mtr) LOC11426467 (mtr) LOC11439633 (mtr) LOC25490247 (mtr) LOC25501609 (mtr) LOC100191342 (zma) LOC100250664 (vvi) LOC100257301 (vvi) LOC100260953 (vvi) LOC100272637 (zma) LOC100284538 (zma) LOC100502392 (zma) LOC100781981 (gma) LOC100789129 (gma) LOC100790751 (gma) LOC100794846 (gma) LOC100797973 (gma) LOC100805274 (gma) LOC100807290 (gma) LOC100814589 (gma) LOC100818588 (gma) EOT2 (sly) LOC101246779 (sly) LOC101246874 (sly) LOC101250986 (sly) LOC101251254 (sly) LOC101255342 (sly) LOC102662493 (gma) LOC102663693 (gma) LOC103626446 (zma) LOC103629573 (zma) LOC103647615 (zma) LOC103828429 (bra) LOC103829616 (bra) LOC103830646 (bra) LOC103832001 (bra) LOC103841026 (bra) LOC103842530 (bra) LOC103852959 (bra) LOC103862463 (bra) LOC103864269 (bra) LOC103869167 (bra) LOC103872632 (bra) SRS7 (bra) LOC106798607 (gma)

Subcellular
localization
wolf

nucl 10	(predict for NP_001330898.1)
nucl 10	(predict for NP_001330899.1)
nucl 10	(predict for NP_201436.1)

Subcellular
localization
TargetP

other 5, chlo 4	(predict for NP_001330898.1)
other 5, chlo 4	(predict for NP_001330899.1)
other 5, chlo 4	(predict for NP_201436.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with SHI on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.9	STY2	Lateral root primordium (LRP) protein-like protein	[detail]	829783
4.7	SRS5	SHI-related sequence 5	[detail]	843888
4.3	LRP1	Lateral root primordium (LRP) protein-like protein	[detail]	831108

Coexpressed
gene list

[Coexpressed gene list for SHI]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

247093_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

247093_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

247093_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	836767
Refseq ID (protein)	NP_001330898.1
	NP_001330899.1
	NP_201436.1

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