ATTED-II : GeneID search result

[←][→] ath AT1G20230 Gene

functional annotation

Function

Pentatricopeptide repeat (PPR) superfamily protein

GO BP

GO:0009451 [list] [network] RNA modification

(403 genes)

IBA

GO CC

GO:0005739 [list] [network] mitochondrion

(4405 genes)

ISM

GO MF

GO:0008270 [list] [network] zinc ion binding

(554 genes)

IEA

KEGG

Protein

NP_173449.1

BLAST

NP_173449.1

Orthologous

[Ortholog page] LOC25496692 (mtr) LOC100248977 (vvi) LOC100266421 (vvi) LOC100786087 (gma) LOC101264885 (sly) LOC103630205 (zma) LOC103872820 (bra) LOC112936099 (osa)

Subcellular
localization
wolf

nucl 6, cyto 3, vacu 1, cysk_plas 1

(predict for NP_173449.1)

Subcellular
localization
TargetP

other 5

(predict for NP_173449.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G20230 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
11.1	AT5G52850	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	835362
10.4	AT1G56690	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	842125
9.8	RARE1	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	831168
8.3	AT4G32430	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	829378
7.2	AT5G38730	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	833864

Coexpressed
gene list

[Coexpressed gene list for AT1G20230]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261277_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261277_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261277_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	838612
Refseq ID (protein)	NP_173449.1

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