ATTED-II : GeneID search result

[←][→] ath AT1G20270 Gene

functional annotation

Function

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

GO BP

GO:0018401 [list] [network] peptidyl-proline hydroxylation to 4-hydroxy-L-proline	(12 genes)	IBA
GO:0055114 [list] [network] oxidation-reduction process	(1468 genes)	IEA

GO CC

GO:0000137 [list] [network] Golgi cis cisterna	(41 genes)	HDA
GO:0005802 [list] [network] trans-Golgi network	(298 genes)	IDA
GO:0005768 [list] [network] endosome	(424 genes)	IDA
GO:0005789 [list] [network] endoplasmic reticulum membrane	(466 genes)	IEA
GO:0005783 [list] [network] endoplasmic reticulum	(877 genes)	IBA
GO:0005794 [list] [network] Golgi apparatus	(1430 genes)	IDA
GO:0005739 [list] [network] mitochondrion	(4405 genes)	ISM
GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IEA
GO:0005634 [list] [network] nucleus	(10793 genes)	HDA

GO MF

GO:0004656 [list] [network] procollagen-proline 4-dioxygenase activity	(12 genes)	IBA
GO:0031418 [list] [network] L-ascorbic acid binding	(23 genes)	IEA
GO:0005506 [list] [network] iron ion binding	(281 genes)	IEA

KEGG

ath00330 [list] [network] Arginine and proline metabolism (54 genes)

Protein

NP_001323402.1 NP_001323403.1 NP_564109.1

BLAST

NP_001323402.1 NP_001323403.1 NP_564109.1

Orthologous

[Ortholog page] AT4G35810 (ath) AT5G66060 (ath) LOC4331220 (osa) LOC4349012 (osa) LOC7485620 (ppo) LOC11420577 (mtr) LOC11439917 (mtr) LOC11441546 (mtr) LOC100193348 (zma) LOC100252283 (vvi) LOC100252286 (vvi) LOC100284871 (zma) LOC100303994 (zma) LOC100527885 (gma) LOC100798201 (gma) LOC100806046 (gma) LOC100818586 (gma) LOC101245118 (sly) LOC101246711 (sly) LOC101267095 (sly) LOC103834925 (bra) LOC103835803 (bra) LOC103837669 (bra) LOC103872941 (bra)

Subcellular
localization
wolf

mito 3, chlo 1, vacu 1, cyto_mito 1, nucl 1, cyto 1, plas 1, extr 1, E.R. 1, golg 1, cyto_nucl 1, nucl_plas 1, golg_plas 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001323402.1)
mito 3, chlo 1, vacu 1, cyto_mito 1, nucl 1, cyto 1, plas 1, extr 1, E.R. 1, golg 1, cyto_nucl 1, nucl_plas 1, golg_plas 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001323403.1)
mito 3, plas 2, cyto 1, extr 1, vacu 1, chlo_mito 1, cyto_mito 1, golg_plas 1	(predict for NP_564109.1)

Subcellular
localization
TargetP

mito 7, scret 5	(predict for NP_001323402.1)
mito 7, scret 5	(predict for NP_001323403.1)
mito 7, scret 5	(predict for NP_564109.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

Genes directly connected with AT1G20270 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
4.7	AT3G03305	Calcineurin-like metallo-phosphoesterase superfamily protein	[detail]	821291
4.6	GTG2	GPCR-type G protein 2	[detail]	828874
4.6	AT1G16040	phosphatidylinositol-glycan biosynthesis class F-like protein	[detail]	838175

Coexpressed
gene list

[Coexpressed gene list for AT1G20270]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

255883_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

255883_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

255883_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	838615
Refseq ID (protein)	NP_001323402.1
	NP_001323403.1
	NP_564109.1

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