[][] ath   At1g27650 Gene
functional annotation
Function   U2 snRNP auxiliary factor small subunit Plant GARDENPlant GARDEN JBrowse
GO BP
GO:0048573 [list] [network] photoperiodism, flowering  (94 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (253 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001077609.1  NP_174086.1 
BLAST NP_001077609.1  NP_174086.1 
Orthologous [Ortholog page] LOC780664 (tae)U2AF35B (ath)LOC4339621 (osa)LOC7474543 (ppo)LOC7494732 (ppo)LOC9268567 (osa)LOC18097994 (ppo)LOC18100077 (ppo)LOC25487504 (mtr)LOC25499390 (mtr)LOC100783847 (gma)LOC100792507 (gma)LOC100794975 (gma)LOC100799606 (gma)LOC100811622 (gma)LOC101245917 (sly)LOC101263952 (sly)LOC103835383 (bra)LOC103839277 (bra)LOC123061714 (tae)LOC123068262 (tae)LOC123070314 (tae)LOC123078766 (tae)LOC123104186 (tae)LOC123121943 (tae)LOC123145919 (tae)LOC123178920 (tae)LOC123179417 (tae)LOC123183104 (tae)LOC123399446 (hvu)LOC123444062 (hvu)LOC123450295 (hvu)
Subcellular
localization
wolf
nucl 10  (predict for NP_001077609.1)
nucl 10  (predict for NP_174086.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001077609.1)
other 7,  chlo 3  (predict for NP_174086.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
Genes directly connected with ATU2AF35A on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.7 TIM17-2 translocase inner membrane subunit 17-2 [detail] 818317
9.5 ASIL2 sequence-specific DNA binding transcription factor [detail] 820635
9.4 U2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein [detail] 834293
9.3 AT4G31430 flocculation protein [detail] 829270
8.5 AT4G08460 hypothetical protein (DUF1644) [detail] 826405
8.4 AT3G10030 aspartate/glutamate/uridylate kinase family protein [detail] 820164
8.1 AT2G45620 Nucleotidyltransferase family protein [detail] 819170
7.7 TIM23-1 translocase of inner mitochondrial membrane 23 [detail] 838327
7.7 PEX13 peroxin 13 [detail] 819945
7.4 AT1G17520 Homeodomain-like/winged-helix DNA-binding family protein [detail] 838326
7.1 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 836117
7.0 ATB' BETA Protein phosphatase 2A regulatory B subunit family protein [detail] 820146
6.4 AT5G60980 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [detail] 836219
6.3 AT1G27090 glycine-rich protein [detail] 839598
Coexpressed
gene list
[Coexpressed gene list for ATU2AF35A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262295_at
262295_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262295_at
262295_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
262295_at
262295_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 839657    
Refseq ID (protein) NP_001077609.1 
NP_174086.1 


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