functional annotation |
Function |
DEAD/DEAH box RNA helicase family protein |
|
GO BP |
GO:0006268 [list] [network] DNA unwinding involved in DNA replication
|
(18 genes)
|
IBA
|
|
GO:0032508 [list] [network] DNA duplex unwinding
|
(29 genes)
|
IBA
|
|
GO:0042631 [list] [network] cellular response to water deprivation
|
(35 genes)
|
IEP
|
|
GO:0000724 [list] [network] double-strand break repair via homologous recombination
|
(68 genes)
|
IBA
|
|
GO:0006310 [list] [network] DNA recombination
|
(143 genes)
|
IBA
|
|
GO:0006281 [list] [network] DNA repair
|
(295 genes)
|
IBA
|
|
|
GO CC |
|
GO MF |
GO:0009378 [list] [network] four-way junction helicase activity
|
(7 genes)
|
IBA
|
|
GO:0005524 [list] [network] ATP binding
|
(2003 genes)
|
IEA
|
|
GO:0003676 [list] [network] nucleic acid binding
|
(4187 genes)
|
IEA
|
|
|
KEGG |
|
|
Protein |
NP_001320575.1
NP_174109.2
|
BLAST |
NP_001320575.1
NP_174109.2
|
Orthologous |
[Ortholog page]
LOC4336217 (osa)
LOC7460032 (ppo)
LOC25501716 (mtr)
LOC100256355 (vvi)
LOC100811214 (gma)
LOC101256877 (sly)
LOC103641779 (zma)
LOC103829042 (bra)
|
Subcellular localization wolf |
nucl 3,
cysk_nucl 2,
chlo 1,
plas 1,
E.R. 1,
E.R._plas 1
|
(predict for NP_001320575.1)
|
nucl 3,
chlo 2,
cysk_nucl 2,
plas 1,
E.R. 1,
chlo_mito 1,
E.R._plas 1
|
(predict for NP_174109.2)
|
|
Subcellular localization TargetP |
other 6,
chlo 6
|
(predict for NP_001320575.1)
|
other 6,
chlo 6
|
(predict for NP_174109.2)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath03430 |
Mismatch repair |
2 |
|
ath03440 |
Homologous recombination |
2 |
|
ath03030 |
DNA replication |
2 |
|
Genes directly connected with AT1G27880 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
12.2 |
SYN3 |
Rad21/Rec8-like family protein |
[detail] |
825124 |
10.2 |
MSH7 |
MUTS homolog 7 |
[detail] |
822040 |
10.2 |
AT3G27640 |
Transducin/WD40 repeat-like superfamily protein |
[detail] |
822386 |
7.0 |
E2F3 |
E2F transcription factor 3 |
[detail] |
818174 |
7.0 |
RAD9 |
cell cycle checkpoint control protein family |
[detail] |
819713 |
6.5 |
AT4G24710 |
pachytene checkpoint-like protein |
[detail] |
828573 |
5.3 |
AT2G46040 |
ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein |
[detail] |
819212 |
|
Coexpressed gene list |
[Coexpressed gene list for AT1G27880]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
245762_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
245762_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
245762_at
X axis is samples (xls file), and Y axis is log-expression.
|