[←][→] ath   AT1G30460 Gene
functional annotation
Function   cleavage and polyadenylation specificity factor 30  
GO BP
GO:1900363 [list] [network] regulation of mRNA polyadenylation  (2 genes)  IMP  
GO:0034052 [list] [network] positive regulation of plant-type hypersensitive response  (7 genes)  IMP  
GO:0043068 [list] [network] positive regulation of programmed cell death  (19 genes)  IMP  
GO:0006378 [list] [network] mRNA polyadenylation  (20 genes)  IMP  
GO:2000031 [list] [network] regulation of salicylic acid mediated signaling pathway  (23 genes)  IMP  
GO:0031124 [list] [network] mRNA 3'-end processing  (26 genes)  IMP  
GO:0009626 [list] [network] plant-type hypersensitive response  (73 genes)  IEA  
GO:0006979 [list] [network] response to oxidative stress  (442 genes)  IMP  
GO:0006396 [list] [network] RNA processing  (831 genes)  IDA TAS  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (5 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0004521 [list] [network] endoribonuclease activity  (85 genes)  IDA  
GO:0004519 [list] [network] endonuclease activity  (145 genes)  IDA  
GO:0005516 [list] [network] calmodulin binding  (182 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_001319113.1  NP_001321474.1  NP_174334.2 
BLAST NP_001319113.1  NP_001321474.1  NP_174334.2 
Orthologous [Ortholog page] LOC4341840 (osa)  LOC25486300 (mtr)  LOC100253258 (vvi)  LOC100787159 (gma)  LOC100802826 (gma)  LOC101254355 (sly)  LOC101263950 (sly)  LOC102665884 (gma)  LOC103626282 (zma)  LOC103629640 (zma)  LOC103835212 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001319113.1)
chlo 3,  nucl 3,  cyto 2,  nucl_plas 2  (predict for NP_001321474.1)
nucl 10  (predict for NP_174334.2)
Subcellular
localization
TargetP
other 8,  chlo 4  (predict for NP_001319113.1)
other 8,  chlo 4  (predict for NP_001321474.1)
other 8,  chlo 4  (predict for NP_174334.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with CPSF30 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.1 MORF4 high molecular weight subunit-like glutenin [detail] 834507
5.9 AT1G07615 GTP-binding protein Obg/CgtA [detail] 5007670
5.9 RUG3 Regulator of chromosome condensation (RCC1) family protein [detail] 836208
Coexpressed
gene list		 [Coexpressed gene list for CPSF30]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261798_at
261798_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261798_at
261798_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261798_at
261798_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839925      
Refseq ID (protein) NP_001319113.1 
NP_001321474.1 
NP_174334.2 


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