[←][→] ath   AT1G42480 Gene
functional annotation
Function   TLR4 regulator/MIR-interacting MSAP protein  
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA  
GO MF
KEGG
Protein NP_001117425.1  NP_001154397.1  NP_564481.1 
BLAST NP_001117425.1  NP_001154397.1  NP_564481.1 
Orthologous [Ortholog page] LOC4328086 (osa)  LOC7494708 (ppo)  LOC11422510 (mtr)  LOC100242718 (vvi)  LOC100272679 (zma)  LOC100781382 (gma)  LOC101263112 (sly)  LOC102661518 (gma)  LOC103833298 (bra) 
Subcellular
localization
wolf
extr 6,  cyto 1,  chlo 1,  mito 1,  vacu 1,  cyto_nucl 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001117425.1)
extr 6,  chlo 1,  golg 1  (predict for NP_001154397.1)
extr 6,  vacu 1,  golg 1  (predict for NP_564481.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001117425.1)
scret 9  (predict for NP_001154397.1)
scret 9  (predict for NP_564481.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 12
ath04145 Phagosome 4
Genes directly connected with AT1G42480 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.4 ATERDJ3B DNAJ heat shock family protein [detail] 825434
9.3 CRT1a calreticulin 1a [detail] 842087
8.8 SDF2 stromal cell-derived factor 2-like protein precursor [detail] 817049
4.2 AT4G21460 Ribosomal protein S24/S35 [detail] 827418
Coexpressed
gene list		 [Coexpressed gene list for AT1G42480]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256543_at
256543_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256543_at
256543_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256543_at
256543_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 840852      
Refseq ID (protein) NP_001117425.1 
NP_001154397.1 
NP_564481.1 


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