[←][→] ath   AT1G49590 Gene
functional annotation
Function   C2H2 and C2HC zinc fingers superfamily protein  
GO BP
GO:0080188 [list] [network] RNA-directed DNA methylation  (20 genes)  IMP  
GO:0009845 [list] [network] seed germination  (93 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IEA  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IMP  
GO CC
GO:0015030 [list] [network] Cajal body  (16 genes)  IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003725 [list] [network] double-stranded RNA binding  (16 genes)  IDA  
GO:0003690 [list] [network] double-stranded DNA binding  (343 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001154412.1  NP_001319183.1  NP_175382.1 
BLAST NP_001154412.1  NP_001319183.1  NP_175382.1 
Orthologous [Ortholog page] LOC4340481 (osa)  LOC11445730 (mtr)  LOC100246948 (vvi)  LOC100285446 (zma)  LOC100776500 (gma)  LOC100779677 (gma)  LOC100804274 (gma)  LOC101247074 (sly)  LOC103871383 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001154412.1)
mito 6,  nucl 3  (predict for NP_001319183.1)
nucl 9  (predict for NP_175382.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001154412.1)
other 6  (predict for NP_001319183.1)
other 7  (predict for NP_175382.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT1G49590 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.6 AT4G30780 ATP-dependent DNA helicase [detail] 829201
5.7 SKIP5 SKP1/ASK-interacting protein 5 [detail] 824613
5.7 AT3G04500 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 819606
5.0 ZML1 ZIM-like 1 [detail] 821670
Coexpressed
gene list		 [Coexpressed gene list for AT1G49590]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261604_at
261604_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261604_at
261604_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261604_at
261604_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841383      
Refseq ID (protein) NP_001154412.1 
NP_001319183.1 
NP_175382.1 


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