[←][→] ath   AT1G53840 Gene
functional annotation
Function   pectin methylesterase 1  
GO BP
GO:0045490 [list] [network] pectin catabolic process  (96 genes)  IEA  
GO:0042545 [list] [network] cell wall modification  (176 genes)  IEA  
GO:0071456 [list] [network] cellular response to hypoxia  (238 genes)  HEP  
GO CC
GO:0005802 [list] [network] trans-Golgi network  (298 genes)  IDA  
GO:0000139 [list] [network] Golgi membrane  (404 genes)  IEA  
GO:0005768 [list] [network] endosome  (424 genes)  IDA  
GO:0005774 [list] [network] vacuolar membrane  (624 genes)  IDA  
GO:0005618 [list] [network] cell wall  (685 genes)  IEA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISS  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA ISM  
GO MF
GO:0051722 [list] [network] protein C-terminal methylesterase activity  (1 genes)  IDA  
GO:0045330 [list] [network] aspartyl esterase activity  (67 genes)  IEA  
GO:0046910 [list] [network] pectinesterase inhibitor activity  (84 genes)  IBA  
GO:0030599 [list] [network] pectinesterase activity  (86 genes)  IBA ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_175787.1 
BLAST NP_175787.1 
Orthologous [Ortholog page] LOC7471605 (ppo)  LOC11445925 (mtr)  LOC100232847 (vvi)  LOC100777128 (gma)  LOC100784642 (gma)  LOC101245743 (sly)  LOC103848507 (bra)  LOC103871107 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 2,  E.R. 2,  nucl_plas 2,  cyto_E.R. 2  (predict for NP_175787.1)
Subcellular
localization
TargetP
other 9  (predict for NP_175787.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 2
Genes directly connected with PME1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.9 PAP18 purple acid phosphatase 18 [detail] 821596
4.8 AT3G19240 Vacuolar import/degradation, Vid27-related protein [detail] 821458
4.4 EXPA8 expansin A8 [detail] 818656
Coexpressed
gene list		 [Coexpressed gene list for PME1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262225_at
262225_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262225_at
262225_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262225_at
262225_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841821      
Refseq ID (protein) NP_175787.1 


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