[←][→] ath   AT1G54200 Gene
functional annotation
Function   DNA mismatch repair Msh6-like protein  
GO BP
GO:0009734 [list] [network] auxin-activated signaling pathway  (196 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG
Protein NP_175822.1 
BLAST NP_175822.1 
Orthologous [Ortholog page] AT3G13980 (ath)  AT3G42800 (ath)  AT5G12050 (ath)  LOC7462232 (ppo)  LOC7463766 (ppo)  LOC7478358 (ppo)  LOC7484642 (ppo)  LOC7490520 (ppo)  LOC7490951 (ppo)  LOC11432422 (mtr)  LOC25481988 (mtr)  LOC25494190 (mtr)  LOC25500538 (mtr)  LOC100242162 (vvi)  LOC100246362 (vvi)  LOC100255952 (vvi)  LOC100779754 (gma)  LOC100795554 (gma)  LOC100798431 (gma)  LOC100798956 (gma)  LOC100801760 (gma)  LOC100802581 (gma)  LOC100803228 (gma)  LOC100809904 (gma)  LOC101246163 (sly)  LOC101257581 (sly)  LOC101259034 (sly)  LOC101264603 (sly)  LOC103832627 (bra)  LOC103842430 (bra)  LOC103846670 (bra)  LOC103850812 (bra)  LOC103855953 (bra)  LOC103870077 (bra)  LOC103871064 (bra)  LOC104645031 (sly) 
Subcellular
localization
wolf
nucl 6,  mito 1,  cyto 1,  extr 1,  pero 1,  chlo_mito 1,  cyto_mito 1,  cyto_pero 1,  mito_plas 1  (predict for NP_175822.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for NP_175822.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
Genes directly connected with AT1G54200 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.1 AT3G13980 SKI/DACH domain protein [detail] 820612
7.1 WAT1 Walls Are Thin 1 [detail] 843886
6.9 HB-8 homeobox-leucine zipper protein ATHB-8 [detail] 829424
Coexpressed
gene list		 [Coexpressed gene list for AT1G54200]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263002_at
263002_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263002_at
263002_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263002_at
263002_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841860      
Refseq ID (protein) NP_175822.1 


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